Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    33   0.18 
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    33   0.18 
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    33   0.18 
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF099914-8|AAC68763.3|  127|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical...    29   3.9  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVL 167
           G  ++    I+ EDA   +SD E RRIR+AF+R    NG  ++ + F + VL
Sbjct: 7   GRSNAIAPIISAEDAKTYISDEEYRRIRQAFQRF--KNG-CINYDEFCYHVL 55


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVL 167
           G  ++    I+ EDA   +SD E RRIR+AF+R    NG  ++ + F + VL
Sbjct: 7   GRSNAIAPIISAEDAKTYISDEEYRRIRQAFQRF--KNG-CINYDEFCYHVL 55


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GAKDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVL 167
           G  ++    I+ EDA   +SD E RRIR+AF+R    NG  ++ + F + VL
Sbjct: 7   GRSNAIAPIISAEDAKTYISDEEYRRIRQAFQRF--KNG-CINYDEFCYHVL 55


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 388 LQVQGSSKILFIYV*AIISLIVYIQGPQKLYFL 290
           L++   +K+LF +V  + S++V ++GP  L++L
Sbjct: 339 LEINNLTKLLFCFVLLLASVMVLMKGPTSLWYL 371


>AF099914-8|AAC68763.3|  127|Caenorhabditis elegans Hypothetical
           protein C40A11.8 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 307 QKLYFLLQVALSEDYYAARSSLNAIPLLVPPQAWYNHSATSYGTP 173
           QKL+ ++ +AL+E YY  R  ++ +P     +A+     T +  P
Sbjct: 26  QKLFIIIFMALTEAYYIGRCFISLVPWADQEEAYEIRDVTRFILP 70


>AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6a protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 362 PFYICMSHYLLDCLHTGSTE 303
           PFY+ ++++LLD LH G  E
Sbjct: 39  PFYVFVTYFLLDALHRGIDE 58


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 210 PGITIPQHRTELRRTEPREQKPPGSVPSRSLR 115
           P  TIP  RTE  RTEP   +PP +   R++R
Sbjct: 560 PPRTIPP-RTEAPRTEPPRTEPPKTEAPRTVR 590


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 217 PQAWYNHSATSYGTPSHRTS*TKASRLSAVPFAPAHLLNASLMRLNSLSDTRLTASS 47
           P+   NH +T+   P+H TS T    +  VP  P  L   S++ L S   T +   S
Sbjct: 516 PEPGSNHISTTAANPAHPTSVTVPQSVPPVPQEP-ELFLKSVLDLTSYIYTLMAVCS 571


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 217 PQAWYNHSATSYGTPSHRTS*TKASRLSAVPFAPAHLLNASLMRLNSLSDTRLTASS 47
           P+   NH +T+   P+H TS T    +  VP  P  L   S++ L S   T +   S
Sbjct: 516 PEPGSNHISTTAANPAHPTSVTVPQSVPPVPQEP-ELFLKSVLDLTSYIYTLMAVCS 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,089
Number of Sequences: 27780
Number of extensions: 358364
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)