Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.12 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 513 CRSLCMSSQDLNWSNVTLSPAPKRPRSISAERCAAVAGR 397
           C   C ++  L W  +     P + R ++A  CAA+  R
Sbjct: 19  CSVRCSAASGLRWFEIWRDSLPTKMRELNATACAALYER 57


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 471 NVTLSPAPKRPRSISAERCAAVAGRDVFSR 382
           N  +SP  +RP+ I+  R +   G   ++R
Sbjct: 216 NGIVSPQEERPKGINGRRASLFCGLQKYTR 245


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 471 NVTLSPAPKRPRSISAERCAAVAGRDVFSR 382
           N  +SP  +RP+ I+  R +   G   ++R
Sbjct: 211 NGIVSPQEERPKGINGRRASLFCGLQKYTR 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 253 RSSLNAIPLLVPPQAWYNHSATSY 182
           R +LN+   L PP  W N  AT +
Sbjct: 461 RITLNSKDPLDPPVIWSNDLATEH 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,913
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)