Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021694
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI...    30   1.2  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    29   2.1  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    27   8.4  
At1g59590.1 68414.m06702 expressed protein                             27   8.4  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    27   8.4  

>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
           GI:5566292 from [Drosophila melanogaster]; contains
           prosite evidence: PS00383: Tyrosine specific protein
           phosphatases active site
          Length = 632

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 294 FSSKLPLVRTTMPRGVP*MRFPFWCLRRPGITIPQHRTELRRTEPREQK 148
           F  K+P  R  M RG   +  P+W   RP ITI  H T++  +  + QK
Sbjct: 368 FDGKVPPERRCMLRGFRLINCPYWI--RPAITISNH-TDILFSTKKHQK 413


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 359 FYICMSHYLLDCLHTGSTETLFSP 288
           FYIC SH+ L  ++T    T+F P
Sbjct: 25  FYICKSHFCLPYIYTTLKSTIFCP 48


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 235 IPLLVPPQAWYNH-SATSYGTPSH--RTS*TKASRLSAVPFAPAHLLNASLMRLNSLSDT 65
           +P+L+PPQ W  +     +  PS+  RT   K  R + +   P   L      L++L +T
Sbjct: 405 LPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQR-TVMKRTPKEQLEPVYEALDTLGNT 463

Query: 64  RLTASSYVIKL 32
           +   +  V+ L
Sbjct: 464 KWKINKKVLSL 474


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 326 NQGDNGSY-IYKKDFARALHLEN-TSL-PATAAQRS 424
           N+G + SY + KKDFAR L +EN TS  P T    S
Sbjct: 173 NRGSSPSYAMKKKDFARKLSIENRTSFNPRTVRDHS 208


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
 Frame = +3

Query: 18  KDSKPSFITYEDAVKRVSDSELRRIREAFKRCAGANGTALSLEAFVHEVL-------CDG 176
           KD    FI    +   V+D E+ R  E ++     + T    +  +H +L        + 
Sbjct: 245 KDVSIPFIIVHGSADAVTDPEVSR--ELYEHAKSKDKTLKIYDGMMHSMLFGEPDDNIEI 302

Query: 177 VPYDVAEWLYQACGGTK 227
           V  D+  WL   CGG K
Sbjct: 303 VRKDIVSWLNDRCGGDK 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,062
Number of Sequences: 28952
Number of extensions: 335328
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)