Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021693
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.8  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   3.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   3.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   6.4  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   8.5  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 574 GCFVIPVFSSCRRFLRFPIDSTIAIRVSIDILKVQFRPCS 693
           GC V+P+ SS     RF + ST  I  +  I++V+ R C+
Sbjct: 211 GCQVVPISSSKFCCSRFGLVSTCEIPPNTPIMEVKGRVCT 250


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 385 PSPYSQHASHPSDHSLIYRKYFEF-FFLPIN 474
           P+PYS HA H  D       Y  F FF P+N
Sbjct: 192 PTPYSSHAFHYLDGYSQSLPYHMFPFFFPLN 222


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +1

Query: 235 PSGTRSLAAIVRDPRLLDEL---DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQH 405
           PSG  +  A++ + +  D++   +R  SP   W+      + LP P +N      P    
Sbjct: 16  PSGLVTAKALLAE-KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 74

Query: 406 ASHPSDHSLIYR 441
           A+ P   S +YR
Sbjct: 75  AALPVYPSPLYR 86


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 337 RTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYRKYFE 453
           RTGDV+P       + P  Y  H    +   + Y+K  E
Sbjct: 119 RTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKKKLE 157


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 259 AIVRDPRLLDELDRESSPVSSWSNVG 336
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +1

Query: 208 PGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRP 387
           PG+ AP+   +  R   A  +          +SSP    S+        PT  SN +  P
Sbjct: 447 PGLAAPIGRKNTLRRTPA--KSSEEAKSTTNDSSPPKDSSSTSTQ----PTEQSNAQQAP 500

Query: 388 SPYSQHASHPSDHS 429
           SP  +    PS+ S
Sbjct: 501 SPKEEERPLPSEPS 514


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 156 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISTEIQNYYESNFLKKLT 13
           P SL  L W++  A V    RVS  I  + +S+++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 232 APSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
           +P GT S   + R P+L    D  S+ +  W    RT
Sbjct: 397 SPEGTNSSLIVYRWPQLTKVFDIPSAAIDGWGQDLRT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,253
Number of Sequences: 5004
Number of extensions: 66209
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)