Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021693
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)           30   1.7  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                29   5.2  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   6.8  
SB_29001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_5296| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 170 CCFCLHVRTGTIILGSWHLFLHLVALGV 253
           CC C+ VR GTI+LG  HLF+H+  + V
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVV 47


>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
          Length = 690

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 217 MAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDV 351
           M PV  P    S+ A+ R PR    LD  SS V      GR G+V
Sbjct: 198 MTPVERPKTAPSVTAVPRQPRPSSSLDSTSSSVQ--EATGRRGEV 240


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 220 APVPAPSGTRSLAAIVRDPRLLDELD-RESSPVSSWSNVGRTGDVLPTPLSNVETRPSPY 396
           APVP  S       +   P+  D+    +S+PV   S V     + P   +  +T+P+P 
Sbjct: 449 APVPQTSQAAQANTL---PQTADKPQAHQSNPVPEVSQVAPKASLAPKANALPQTKPTPQ 505

Query: 397 SQHASHPSD 423
            Q AS  SD
Sbjct: 506 DQDASGDSD 514


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 300 TVQFIQQSRITHNRC*TPSATRC----RNRCHDPRIIVPVRTCRQKQHSHSLPRSLPNLG 133
           T+  +QQS +   RC T SATRC      RC    I     TCR +    +LP      G
Sbjct: 781 TLHGVQQSALHATRCTTISATRCTTISATRC--TTISTTRYTCRLRYVMAALPTRPSYDG 838

Query: 132 W 130
           W
Sbjct: 839 W 839


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 355 PTPLSNVETRPSPYSQHASHPSDHSLIYRK 444
           P P S   T+P P+S   + P  HS ++ K
Sbjct: 80  PQPHSAATTKPQPHSAATTKPQPHSAVHTK 109



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 355 PTPLSNVETRPSPYSQHASHPSDHS 429
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 181 PTCSDWHNYPGIMAPVPAP 237
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_29001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 298 RESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYRKYFE 453
           R  +P +  + V RT  +   P+S V    + ++ + + PS  SL+YR++FE
Sbjct: 53  RSYTPPNKMTEVRRTSYLKLEPISCVPQ--AFWNTYHADPSRRSLVYRRHFE 102


>SB_5296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
 Frame = -3

Query: 309 G*LTVQFIQQSRITHNRC*--------TPSATRCRNRCHDPR 208
           G + V   QQ+  +HNRC         T   +R  NRCHD R
Sbjct: 161 GGIDVMVTQQTSRSHNRCHGNTADVTATQQTSRSHNRCHDQR 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,211,463
Number of Sequences: 59808
Number of extensions: 496187
Number of successful extensions: 1353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)