Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021693
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 31 0.64
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 31 0.64
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 1.5
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.5
Z81481-6|CAB63435.1| 344|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 6.0
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 149 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 247
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 149 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 247
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 8884 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 8937
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 8938 GQVLPTDASGNYIYPVIGPDGQALPTDES 8966
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 9029 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 9082
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 9083 GQVLPTDASGNYIYPVIGPDGQALPTDES 9111
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + + + + E + + P+ G
Sbjct: 8614 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFITEDGQIVEKNDDGKPI------GPD 8667
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSD--HSLIY 438
G VLPT S+ PS S + P+D S+IY
Sbjct: 8668 GQVLPTDSSDNYIYPSIGSDEQAMPTDTTGSVIY 8701
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 8929 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 8982
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 8983 GQVLPTDASGNYIYPVIGPDGQALPTDES 9011
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 9074 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 9127
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 9128 GQVLPTDASGNYIYPVIGPDGQALPTDES 9156
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + + + + E + + P+ G
Sbjct: 8659 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFITEDGQIVEKNDDGKPI------GPD 8712
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSD--HSLIY 438
G VLPT S+ PS S + P+D S+IY
Sbjct: 8713 GQVLPTDSSDNYIYPSIGSDEQAMPTDTTGSVIY 8746
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 8929 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 8982
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 8983 GQVLPTDASGNYIYPVIGPDGQALPTDES 9011
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 34/89 (38%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + VRD E D E P +G
Sbjct: 9074 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFVRDDGQAIEKDDEGKP------IGPD 9127
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSDHS 429
G VLPT S P + P+D S
Sbjct: 9128 GQVLPTDASGNYIYPVIGPDGQALPTDES 9156
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 163 VAMLLLPTCSDWHNYPGIMAPVPAPSGTRSLAAIVRDPRLLDELDRESSPVSSWSNVGRT 342
V +LPT + I P P GT + + + + + E + + P+ G
Sbjct: 8659 VTTKVLPTDDSGNVVHPITRPDGTPLGTDASGSFITEDGQIVEKNDDGKPI------GPD 8712
Query: 343 GDVLPTPLSNVETRPSPYSQHASHPSD--HSLIY 438
G VLPT S+ PS S + P+D S+IY
Sbjct: 8713 GQVLPTDSSDNYIYPSIGSDEQAMPTDTTGSVIY 8746
>Z81481-6|CAB63435.1| 344|Caenorhabditis elegans Hypothetical
protein C38D9.8 protein.
Length = 344
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 140 TWDGILTLPWL*NAQELVPEYAPTIFPLK 54
+WD I+ L L NAQE PE+ P F LK
Sbjct: 235 SWDPIVVLEGL-NAQEWSPEHRPQKFSLK 262
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 337 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 426
R+ D LPT L NV TRP+ + P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,991
Number of Sequences: 27780
Number of extensions: 374050
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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