Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021693
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 605 HEENTGMTKHPKLDVSGIL 549
           HEEN  + KHP     G L
Sbjct: 381 HEENESVDKHPNRRARGQL 399


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 630 RFYYSD*SVHRHLKSSVSSLFHCHIQGDV 716
           R +YS+      ++  + S+ HCH  G V
Sbjct: 3   REFYSEADASHCIQQILESVHHCHHNGVV 31


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 600 FMQAVFEISHRFYYSD 647
           F  + F I H F+Y D
Sbjct: 341 FKDSSFRIQHHFFYPD 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,318
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)