Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021693
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   4.2  
At2g09900.1 68415.m01028 hypothetical protein                          28   5.6  
At2g07776.2 68415.m00891 hypothetical protein                          28   5.6  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    28   7.4  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    28   7.4  
At2g09910.1 68415.m01029 hypothetical protein                          28   7.4  
At1g27090.1 68414.m03302 glycine-rich protein                          28   7.4  
At4g32630.1 68417.m04645 hypothetical protein                          27   9.8  
At1g51805.1 68414.m05838 leucine-rich repeat protein kinase, put...    27   9.8  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   9.8  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   9.8  

>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 186 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 85
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At2g09900.1 68415.m01028 hypothetical protein
          Length = 175

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 361 VWAVHLQCA----PHCSMNSLGMTHGPVHPAIEDHAQSLLNS 248
           V  +HL C     PHCS     +T  P+   ++D  QSLL+S
Sbjct: 92  VECLHLHCQTTTRPHCSTWKSSITITPLDCILDDKLQSLLHS 133


>At2g07776.2 68415.m00891 hypothetical protein
          Length = 109

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 346 DVLPTPLSNVETR-PSPYSQHASHPSDHSLIYRK 444
           D+LPTP +    R PSP+S+   +PS H  I++K
Sbjct: 27  DLLPTPRNRSNGRLPSPFSR-VINPSTHLSIHKK 59


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 86  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 229
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 97  ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 86  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 229
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203


>At2g09910.1 68415.m01029 hypothetical protein
          Length = 985

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 229 PAPSGTRSLAAIVRDPRLLDELDRESS---PVSSWSNVGRTGDVLPTPLSNVETRPSPYS 399
           P+     S +  +  P LLDE DRE S   P +   +V         PL ++E   + + 
Sbjct: 31  PSDEAQSSRSNRIEIPTLLDEPDREGSGGHPAAPEDSVDFLAQF--DPLIDLEDAYNTHP 88

Query: 400 QHASHPSDHSLIYRKYFEFFFLPI 471
           Q+     +  L++  Y EF   PI
Sbjct: 89  QYTEAEVNARLLHEDYVEFDLDPI 112


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 345 RCTAHTTVKCGNSSQPILSTCFTS 416
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 304 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSL 432
           +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSM 403


>At1g51805.1 68414.m05838 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +1

Query: 250 SLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHS 429
           +L A V     ++E+   +   S    + +TGD +P  ++ +E RP   + + +      
Sbjct: 127 NLWATVSRSETVEEIIHVTKSDSLQVCLAKTGDFIPF-INILELRPLKKNVYVTESGSLK 185

Query: 430 LIYRKYF 450
           L++RKYF
Sbjct: 186 LLFRKYF 192


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 131 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 229
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 131 HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 229
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,128
Number of Sequences: 28952
Number of extensions: 347446
Number of successful extensions: 923
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)