Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021692
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    65   1e-11
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   4.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 30/51 (58%), Positives = 39/51 (76%)
 Frame = +1

Query: 634 PILYQHLF*FFGHPEVYILILPGFGIISHIIFTRKRKKRNFWLLGIIYAIL 786
           P+LYQHLF FFGHPEVYILI+P FG++SHII +   K   F   G+++A+L
Sbjct: 235 PVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPSLAHKP-IFGKEGMLWAML 284



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +1

Query: 73  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 246
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 247 NNIDFDSYPPPL 282
           NN  F   PP L
Sbjct: 105 NNFTFWLLPPAL 116



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 35/68 (51%)
 Frame = +3

Query: 303 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 482
           + E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 483 SFDQLPLF 506
           S  Q+PLF
Sbjct: 184 SLYQMPLF 191



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +2

Query: 512 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGPAGGGD 634
           A+ IT+          AG + +L +DRNLNTSF+ P GGGD
Sbjct: 194 AIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGD 234


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 633 SPPPAGPKNDVFKFRSVNNIVIAPAKTGSD--NNNKNAVIPTAQQIRVID 490
           S  P+ PK + + F S+  ++ + +K+G    +  +NA++P  Q + + D
Sbjct: 600 SKNPSNPKFNHYLFESIGALIRSLSKSGPQTVSQLENALLPVFQNVLIED 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,692
Number of Sequences: 5004
Number of extensions: 42725
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)