Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021691
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 140 7e-34
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 139 2e-33
03_01_0031 + 292335-292844 31 0.60
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 29 2.4
11_06_0463 + 23879587-23879771,23879783-23881658 29 3.2
03_05_0641 - 26341903-26342199,26342292-26342378 29 3.2
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 29 4.2
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 28 5.6
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 7.4
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 27 9.8
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 27 9.8
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 27 9.8
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 27 9.8
04_04_0921 - 29431812-29432786 27 9.8
02_04_0550 - 23795957-23796154,23796596-23796650,23797324-237973... 27 9.8
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 140 bits (340), Expect = 7e-34
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +2
Query: 257 LPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCN 436
LP YTT GTIHIV NNQ+ FTTDPR RSS YCTDVA+ ++APIFHVNGD+ EAV+HVC
Sbjct: 413 LPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCE 472
Query: 437 VAAEWRATFHKDVVIDIVSYRRNG 508
+AAEWR TFH DVV+DIV YRR G
Sbjct: 473 LAAEWRQTFHSDVVVDIVCYRRFG 496
Score = 111 bits (267), Expect = 5e-25
Identities = 52/84 (61%), Positives = 66/84 (78%)
Frame = +3
Query: 3 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
+GDVKYHLGT +R R K+I L++ ANPSHLEAVDPVV GKTRA+Q+Y D + K
Sbjct: 329 TGDVKYHLGTSYDRPTR-GGKHIHLSLVANPSHLEAVDPVVAGKTRAKQYYSNDLDRTKN 387
Query: 183 MSILLHGDAAFAGQGVVFETMHLS 254
+ +LLHGD +F+GQGVV+ET+HLS
Sbjct: 388 LGVLLHGDGSFSGQGVVYETLHLS 411
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEV 636
+NE+DEP FTQP MY+ IR + LE Y ++L+ G ++ E++
Sbjct: 497 HNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDI 539
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 139 bits (337), Expect = 2e-33
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +2
Query: 257 LPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCN 436
LP+YTT GTIHIV NNQ+ FTTDPR RSS YCTDVA+ +NAPIFHVNGD+ EAV+ VC
Sbjct: 406 LPSYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDLEAVVRVCE 465
Query: 437 VAAEWRATFHKDVVIDIVSYRRNG 508
+AAEWR TFH DVV+D++ YRR G
Sbjct: 466 LAAEWRQTFHSDVVVDLICYRRFG 489
Score = 113 bits (272), Expect = 1e-25
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +3
Query: 3 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
+GDVKYHLGT +R R K I L++ ANPSHLEAVDPVV GKTRA+QFY D + K
Sbjct: 322 TGDVKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQFYSNDLDRTKN 380
Query: 183 MSILLHGDAAFAGQGVVFETMHLS 254
M IL+HGD +FAGQGVV+ET+HLS
Sbjct: 381 MGILIHGDGSFAGQGVVYETLHLS 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKDVKD 651
+NE+DEP FTQP MYQ I+ L+ Y +L+ G V+ E+V+ + +
Sbjct: 490 HNEIDEPSFTQPKMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHE 537
>03_01_0031 + 292335-292844
Length = 169
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -2
Query: 368 GPRLCSRRKIWSAWGRS*TRSGCWRRCVWSRAW 270
G R C RR WS W R R G RR W R W
Sbjct: 28 GARGCGRR--WSEWRRWRRRRGWRRRWGWQRRW 58
>05_07_0364 -
29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 348 PTAQTWPAL*TLRYST 395
PTA +WP L TLRYST
Sbjct: 516 PTAASWPMLWTLRYST 531
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -3
Query: 274 RGVGGQVDRCIVSNTTP*PANAASPCSRIDITFLPSLSPL*NCSALVLPCTTGSTASKCE 95
R VGG V V TP P AA PSLSP +CS + + +G + E
Sbjct: 293 RMVGGMV----VDAFTPEPPTAAEKSGDAS----PSLSPSPSCSTVAVSEASGHHVLRIE 344
Query: 94 GFAQTANLM 68
G+ +T +M
Sbjct: 345 GYKRTKMMM 353
>03_05_0641 - 26341903-26342199,26342292-26342378
Length = 127
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 84 CANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQG 227
C + H EAV + + ++ +GD+ +K +L HGD A A G
Sbjct: 51 CRSCGHCEAVQVPITPQQLQKKRGQGDDRRRKKKQLLGHGDRAAAAGG 98
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 425 HVCNVAAEWRATFHKDVVIDIVSYRRNGTTKSTNRCSLSPSCTRRFVR 568
++C+ +W + F VI + Y T K N ++ SC R R
Sbjct: 715 NICSQGTDWTSRFASQDVISHLCYIYRATGKQENTRLIAGSCLARLAR 762
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 478 DNVLVERGSPFGS-HVTNVHHGLGIVAVHVE 389
+N+L + G P + H +V H L VA H+E
Sbjct: 291 ENLLAQMGDPSANRHAPSVEHSLAEVAAHIE 321
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 226 ASCSRRCTCRPARLHHARDHTHRRQQPD 309
AS + + T R R HA THRR PD
Sbjct: 23 ASSASKATSRVWRTEHAGTGTHRRAHPD 50
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 229 SCSRRCTCRPARLHHARDHTHRRQQ 303
SC C C + HH+R H HR +Q
Sbjct: 2035 SCLTACDCEGS--HHSRSHGHRGEQ 2057
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 402 PFTWNIGAFTTRATSVQ*AEDLECLGSVVNPIWL 301
P NI T RAT + EDL+ LGS+ + ++L
Sbjct: 1322 PLLSNITELTLRATELSAEEDLKVLGSLPSLLYL 1355
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 51 RVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
+ + +I VC N H E +TR E Y G+N GKK+
Sbjct: 252 KALDSHITCEVCGNTGHSENDC----SETREEAMYMGNNNGKKL 291
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 268 HHARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDI 390
HH R H H+RQ+ H R Q R R PR +R +
Sbjct: 137 HHHRHHHHQRQRHHHHHQRQQR----RGSRTRDPRVRRGPL 173
>04_04_0921 - 29431812-29432786
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -2
Query: 338 WSAWGRS*TRSGC-WRRCVWSRAWCRRAGR 252
W+AW + C W RC SR W GR
Sbjct: 144 WAAWAGLCSSGRCAWLRCGGSRWWSAAGGR 173
>02_04_0550 -
23795957-23796154,23796596-23796650,23797324-23797376,
23797453-23797529,23797613-23797736,23797848-23797964,
23798439-23798547,23798724-23798829,23799043-23799106,
23799214-23799333
Length = 340
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 39 ERLNRVTNKNIRLAVCANPSHL--EAVDPVVQGKTRAEQFYRGD 164
E LN N+N +CAN H + V P +G T RG+
Sbjct: 110 ESLNPCANRNCLTNICANLHHFTEDYVPPSYEGSTACVVIIRGN 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,805
Number of Sequences: 37544
Number of extensions: 398419
Number of successful extensions: 1238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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