Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021691
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07) 113 2e-25
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40) 99 4e-21
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 51 9e-07
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 34 0.087
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10) 31 1.1
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 30 1.4
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 30 1.4
SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 30 1.9
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05) 29 2.5
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.3
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 4.3
SB_37913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0) 28 5.7
SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19) 28 7.6
>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
Length = 406
Score = 113 bits (271), Expect = 2e-25
Identities = 63/101 (62%), Positives = 69/101 (68%), Gaps = 17/101 (16%)
Frame = +3
Query: 3 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQ-----------------G 131
SGDVKYHLG +RLNR TNK I+LAV ANPSHLE V G
Sbjct: 288 SGDVKYHLGMSHQRLNRGTNKIIQLAVVANPSHLEGDKTTVALPNLLKSLFNFREVSQGG 347
Query: 132 KTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVVFETMHLS 254
KT+AEQFYRGD GK+VMSILLHGDAAF+GQGVV+ET HLS
Sbjct: 348 KTKAEQFYRGDARGKEVMSILLHGDAAFSGQGVVYETFHLS 388
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 257 LPAYTTHGTIHIVANNQ 307
LP YTTHGTIHIV NNQ
Sbjct: 390 LPHYTTHGTIHIVVNNQ 406
>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
Length = 382
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +2
Query: 257 LPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCN 436
L Y T GTIH+V NNQ+GFTT+ +RSS YCTDVA+V +P+ HVN D+ EAV+H
Sbjct: 208 LDGYKTGGTIHLVINNQVGFTTNYLDARSSTYCTDVAKVTLSPVLHVNADDAEAVVHAML 267
Query: 437 VAAEWRATFHKDVVIDIVSYRRNG 508
A ++R F DV ID++ YR+ G
Sbjct: 268 FALDYRMEFGSDVFIDLLGYRKYG 291
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +3
Query: 6 GDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVM 185
GDVKYHLG +R + K I L + NPSHLE V V++G RA+Q N+ KV+
Sbjct: 125 GDVKYHLGLTSDRTT-TSGKKINLNLAPNPSHLETVGAVIEGIARAKQDRNYPNDFSKVL 183
Query: 186 SILLHGDAAFAGQGVVFETMHLS 254
I +HGDAA AGQG+V+E + ++
Sbjct: 184 PIAVHGDAAIAGQGIVYEIIQMA 206
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +1
Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKDVKD 651
+NE DEP FTQP++Y+ I K K + YA++L A GV+ A VK++++
Sbjct: 292 HNEGDEPKFTQPILYKTIAKHKNARDIYAEKLKAAGVIDANYVKELEE 339
>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
Length = 311
Score = 50.8 bits (116), Expect = 9e-07
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Frame = +3
Query: 3 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQF------YRGD 164
+GDV HL + ++ L+ + + + NPSHLEA +PVV GK R Q Y D
Sbjct: 152 TGDVLSHLTSSVD-LDYGGQDPLHVTMLPNPSHLEACNPVVAGKARGRQMTLKEGDYSID 210
Query: 165 NE----GKKVMSILLHGDAAFAGQ 224
++ G KV +L+HGDA+FA Q
Sbjct: 211 DKDARIGDKVTCLLVHGDASFADQ 234
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 413 EAVMHVCNVAAEWRATFHKDVVIDIVSYRR 502
E V +A E+R + KDVV+D+ YRR
Sbjct: 281 EEVARAAMLALEYRMKYRKDVVVDMFCYRR 310
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 34.3 bits (75), Expect = 0.087
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +1
Query: 223 RASCSRRCTCRPARLH-HARDHTHRR------QQPDRVHDRPQALQIFRLLHRRGPRCKR 381
R+ S RP R +RDH+ RR + PDR R +R + R R +R
Sbjct: 243 RSRRSAESDSRPKRSRSRSRDHSSRRNSRDKSRDPDRDRPRDSERDRYRDIERDRHRDRR 302
Query: 382 SDIPRERRQSRGRDAR 429
R+R++SR RD R
Sbjct: 303 HSRDRDRKRSRSRDRR 318
>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
Length = 289
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 544 LMYQKIRKTKPVLEKYADQLIAEGVVTAE 630
L Q I+K K V++ Y D+LI+EGV E
Sbjct: 67 LYLQNIKKGKEVIQYYIDELISEGVTFIE 95
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +1
Query: 217 LVRASCSRRCTCRPARLHHARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPR 396
L R S RR + R + ++R HRR R H + R R R +R R
Sbjct: 54 LGRDSSERRPSARVSS-DNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRDRRRSSSR 112
Query: 397 ERRQSRGRD 423
ERR R RD
Sbjct: 113 ERRPPRDRD 121
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 361 RGPRCKRSDIPRERRQSRGRDAR 429
R PR KRS PR+RR+S+ R R
Sbjct: 285 RSPRSKRSRSPRKRRRSKSRSPR 307
>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
Length = 641
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 235 SRRCTCRPARLHHARDHTHRRQQPDRVHDRPQ 330
S++ T P R H A D R Q+ D DRPQ
Sbjct: 285 SQKTTDTPDRPHEATDEPDRSQEADDTPDRPQ 316
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +1
Query: 217 LVRASCSRRCTCRPARLHHARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPR 396
L R S RR + R + ++R HRR R H + R R R +R R
Sbjct: 54 LGRDSSERRPSVRVSS-DNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRDRRRSSSR 112
Query: 397 ERRQSRGRD 423
ERR R RD
Sbjct: 113 ERRPPRDRD 121
>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
Length = 1084
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 544 GAE*TSVRRLRCSVSPVADDVNDNVLVERGSPFGSHVTNV 425
GAE ++++ +SPV D N ++ + PFG V NV
Sbjct: 289 GAE-KLLKQINIQLSPVGDQANTEFIINKLLPFGQGVENV 327
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 9 DVKYHLGTYIERLNRVTNKNIRLAV-CANPSHLEAVDPVVQ----GKTRAEQFY 155
D + H GT +ERL V +N+ V A P+ + +P +Q KT A +Y
Sbjct: 1381 DQRPHFGTLVERLGNVLERNVAKVVNVAKPAIVAKDNPYLQLLADDKTGATDYY 1434
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = +1
Query: 232 CSRRCTCRPARLHHARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPRERRQS 411
C R T A RD + P RV D + H PRC R + +E S
Sbjct: 303 CVRDSTEHEASPRCVRDSMEQEAGPSRVRDSTE--------HEASPRCVRDSMEQEAGPS 354
Query: 412 RGRDA 426
R RD+
Sbjct: 355 RVRDS 359
>SB_37913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 292 RRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPR 396
R +QP Q LQ R + +RG KRSD+P+
Sbjct: 131 RWEQPAEASANDQVLQQLRAMIQRGWPSKRSDVPQ 165
>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1457
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 577 VLEKYADQLIAEGVVTAEEVKDVKD 651
VLE + +QLI+EGVVT +E +++D
Sbjct: 536 VLE-FGNQLISEGVVTEKEENEIRD 559
>SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +1
Query: 253 RPARLHHARDHTHRRQ----QPDRVHDRP 327
+P +H+ RDH H +PD VH++P
Sbjct: 34 KPDHVHNKRDHVHMSDHVPSKPDHVHNKP 62
>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
Length = 705
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 544 GAE*TSVRRLRCSVSPVADDVNDNVLVERGSPFGSHVTNV 425
GAE ++++ +SPV D N ++++ PF V NV
Sbjct: 350 GAE-KLLKQINIQLSPVGDQANTEFIIDKLLPFSQGVENV 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,834,500
Number of Sequences: 59808
Number of extensions: 457111
Number of successful extensions: 4872
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4870
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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