Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021691
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...   155   3e-38
Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...    89   2e-18
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...    89   2e-18
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    29   2.2  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    29   3.8  
Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score =  155 bits (375), Expect = 3e-38
 Identities = 67/85 (78%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 DLPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVC 433
           DLP+YTTHG IHIV NNQIGFTTDPR SRSS YCTDV RVV  PIFHVN D+PEAVMHVC
Sbjct: 432 DLPSYTTHGAIHIVVNNQIGFTTDPRSSRSSPYCTDVGRVVGCPIFHVNVDDPEAVMHVC 491

Query: 434 NVAAEWRATFHKDVVIDIVSYRRNG 508
           NVAA+WR TF KDV++D+V YRR+G
Sbjct: 492 NVAADWRKTFKKDVIVDLVCYRRHG 516



 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/83 (72%), Positives = 68/83 (81%)
 Frame = +3

Query: 3   SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
           SGDVKYHLG  IERLNR + KN+++AV ANPSHLEAVDPVV GK RAE FY GD +  + 
Sbjct: 348 SGDVKYHLGVCIERLNRQSQKNVKIAVVANPSHLEAVDPVVMGKVRAEAFYAGDEKCDRT 407

Query: 183 MSILLHGDAAFAGQGVVFETMHL 251
           M+ILLHGDAAFAGQGVV ET +L
Sbjct: 408 MAILLHGDAAFAGQGVVLETFNL 430



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +1

Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKD 642
           +NE+DEPMFTQPLMYQ+I++TK  LEKY ++++ EGV   + VK+
Sbjct: 517 HNELDEPMFTQPLMYQRIKQTKTALEKYQEKILNEGVANEQYVKE 561


>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/95 (42%), Positives = 57/95 (60%)
 Frame = +2

Query: 260 PAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCNV 439
           P +   GT+H+V NNQI FT +    RSS +CTD+A+    P+ HVNGD+PE V+    +
Sbjct: 342 PHFRLGGTVHLVTNNQIAFTAESSVGRSSTHCTDIAKAFEYPVIHVNGDHPEEVVKATRL 401

Query: 440 AAEWRATFHKDVVIDIVSYRRNGTTKSTNRCSLSP 544
           A  +R  F KDV I++V +RR G  +  +    SP
Sbjct: 402 ALAYRERFRKDVFINLVCFRRWGHNELDDPTFTSP 436



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
 Frame = +3

Query: 3   SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFY--RGD---- 164
           +GDV  HL +  +   + +  N+ + +  NPSHLEAV+PV  GK RA  +   +GD    
Sbjct: 248 AGDVLSHLVSSFDY--KGSEGNVHVTMLPNPSHLEAVNPVAMGKARARAWSMNKGDYSPD 305

Query: 165 ----NEGKKVMSILLHGDAAFAGQGVVFETMHLS 254
                 G  V+++L+HGD AF GQGVV+E++ LS
Sbjct: 306 ERSARAGDSVLNVLVHGDGAFTGQGVVWESIALS 339



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +1

Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKD 642
           +NE+D+P FT P+MY+++   + V   + D+L+ EG  T E VK+
Sbjct: 425 HNELDDPTFTSPVMYKEVEARESVPRLFLDRLVEEGFTTEEAVKE 469


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/95 (42%), Positives = 57/95 (60%)
 Frame = +2

Query: 260 PAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCNV 439
           P +   GT+H+V NNQI FT +    RSS +CTD+A+    P+ HVNGD+PE V+    +
Sbjct: 342 PHFRLGGTVHLVTNNQIAFTAESSVGRSSTHCTDIAKAFEYPVIHVNGDHPEEVVKATRL 401

Query: 440 AAEWRATFHKDVVIDIVSYRRNGTTKSTNRCSLSP 544
           A  +R  F KDV I++V +RR G  +  +    SP
Sbjct: 402 ALAYRERFRKDVFINLVCFRRWGHNELDDPTFTSP 436



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
 Frame = +3

Query: 3   SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFY--RGD---- 164
           +GDV  HL +  +   + +  N+ + +  NPSHLEAV+PV  GK RA  +   +GD    
Sbjct: 248 AGDVLSHLVSSFDY--KGSEGNVHVTMLPNPSHLEAVNPVAMGKARARAWSMNKGDYSPD 305

Query: 165 ----NEGKKVMSILLHGDAAFAGQGVVFETMHLS 254
                 G  V+++L+HGD AF GQGVV+E++ LS
Sbjct: 306 ERSARAGDSVLNVLVHGDGAFTGQGVVWESIALS 339



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +1

Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKD 642
           +NE+D+P FT P+MY+++   + V   + D+L+ EG  T E VK+
Sbjct: 425 HNELDDPTFTSPVMYKEVEARESVPRLFLDRLVEEGFTTEEAVKE 469


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 223 RASCSRRCTCRPARLHHARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPRER 402
           R S SRR +    R   +R    RR  PDR  +R ++    R  HR     +R    ++R
Sbjct: 430 RRSNSRRRSRSRDRQRRSRSRDRRRYSPDR-RERRRSRSRDRRRHRSRSTSRRRQRSKDR 488

Query: 403 RQSRGRD 423
           R+ R RD
Sbjct: 489 RRDRSRD 495


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 361 RGPRCKRSDIPRERRQSRGRD 423
           R PR +RS  PR RR SR RD
Sbjct: 276 RSPRRRRSPSPRRRRDSRDRD 296


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 361 RGPRCKRSDIPRERRQSRGRD 423
           R PR +RS  PR RR SR RD
Sbjct: 276 RSPRRRRSPSPRRRRDSRDRD 296


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +1

Query: 274 ARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPR-CKRSDIPRERRQSRGRDARL*RGCRM 450
           +R    R + P R  DR +     R   RRG R   R+   R R +S   D R  R  R 
Sbjct: 395 SRRKRSRSRSPHRDRDRDRR---DRETRRRGERESDRTSSRRHRSRSASGDRRRKRDDRE 451

Query: 451 ESHVPQGRCH*HRQLQEKRNNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAE 630
                + R     + +  R  + +E   +     +K RK K    ++ D+  + GVV  E
Sbjct: 452 REKRRERRGDDEDRKKRSRRGDEEEESSSG----RKERKEKSSRSRHEDEESSTGVVVKE 507

Query: 631 EVKD 642
           E+ D
Sbjct: 508 EIPD 511


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 73  DWLFARTPRTWRPSTPWCRARPEP 144
           DW F    R W P  PW R R  P
Sbjct: 28  DWFFPGPLRPWGPPPPWHRNRGPP 51


>Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical
           protein ZC434.4 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 39  ERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGDAAFA 218
           +R+ +V  +     +  +P  L  +   + GK  AE+      +  K  SI++    AF 
Sbjct: 7   KRVKKVAKRKSEKVIHLDPDALRYLRFRIGGKYMAERHMFLKKDPSKENSIIVSNIPAFV 66

Query: 219 GQGVV 233
           G+GVV
Sbjct: 67  GEGVV 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,650
Number of Sequences: 27780
Number of extensions: 306928
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)