Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021691
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone...   138   2e-33
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...   134   6e-32
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    33   0.22 
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote...    29   2.0  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    29   3.5  
At4g22030.1 68417.m03187 F-box family protein PF0064: F-box doma...    28   6.2  
At5g28237.2 68418.m03423 tryptophan synthase, beta subunit, puta...    27   8.2  
At5g28237.1 68418.m03422 tryptophan synthase, beta subunit, puta...    27   8.2  
At3g50210.2 68416.m05490 2-oxoacid-dependent oxidase, putative s...    27   8.2  
At3g50210.1 68416.m05491 2-oxoacid-dependent oxidase, putative s...    27   8.2  
At3g24120.2 68416.m03029 myb family transcription factor contain...    27   8.2  
At3g24120.1 68416.m03028 myb family transcription factor contain...    27   8.2  
At1g76520.2 68414.m08905 auxin efflux carrier family protein con...    27   8.2  
At1g76520.1 68414.m08904 auxin efflux carrier family protein con...    27   8.2  

>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1017

 Score =  138 bits (335), Expect = 2e-33
 Identities = 60/84 (71%), Positives = 69/84 (82%)
 Frame = +2

Query: 257 LPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCN 436
           LP YTT GTIHIV NNQ+ FTTDPR  RSS YCTDVA+ ++APIFHVNGD+ EAV+H C 
Sbjct: 417 LPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALSAPIFHVNGDDVEAVVHACE 476

Query: 437 VAAEWRATFHKDVVIDIVSYRRNG 508
           +AAEWR TFH DVV+D+V YRR G
Sbjct: 477 LAAEWRQTFHSDVVVDLVCYRRFG 500



 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/84 (60%), Positives = 63/84 (75%)
 Frame = +3

Query: 3   SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
           +GDVKYHLGT  +R  R   K I L++ ANPSHLEA D VV GKTRA+Q+Y  D +  K 
Sbjct: 333 TGDVKYHLGTSYDRPTR-GGKKIHLSLVANPSHLEAADSVVVGKTRAKQYYSNDLDRTKN 391

Query: 183 MSILLHGDAAFAGQGVVFETMHLS 254
           + IL+HGD +FAGQGVV+ET+HLS
Sbjct: 392 LGILIHGDGSFAGQGVVYETLHLS 415



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +1

Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKDVKD 651
           +NE+DEP FTQP MY+ I+     L+ Y  +L+  G V+ +++  +++
Sbjct: 501 HNEIDEPSFTQPKMYKVIKNHPSTLQIYHKKLLECGEVSQQDIDRIQE 548


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score =  134 bits (323), Expect = 6e-32
 Identities = 57/84 (67%), Positives = 67/84 (79%)
 Frame = +2

Query: 257 LPAYTTHGTIHIVANNQIGFTTDPRHSRSSAYCTDVARVVNAPIFHVNGDNPEAVMHVCN 436
           LP Y T GT+HIV NNQ+ FTTDPR  RSS YCTDVA+ ++APIFHVN D+ EAV+H C 
Sbjct: 421 LPNYCTGGTVHIVVNNQVAFTTDPREGRSSQYCTDVAKALSAPIFHVNADDIEAVVHACE 480

Query: 437 VAAEWRATFHKDVVIDIVSYRRNG 508
           +AAEWR TFH DVV+D+V YRR G
Sbjct: 481 LAAEWRQTFHSDVVVDLVCYRRFG 504



 Score =  111 bits (267), Expect = 4e-25
 Identities = 53/84 (63%), Positives = 65/84 (77%)
 Frame = +3

Query: 3   SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKV 182
           +GDVKYHLGT  +R  R   K++ L++ ANPSHLEAVDPVV GKTRA+Q+Y  D    K 
Sbjct: 337 TGDVKYHLGTSYDRPTR-GGKHLHLSLVANPSHLEAVDPVVIGKTRAKQYYTKDENRTKN 395

Query: 183 MSILLHGDAAFAGQGVVFETMHLS 254
           M IL+HGD +FAGQGVV+ET+HLS
Sbjct: 396 MGILIHGDGSFAGQGVVYETLHLS 419



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/47 (42%), Positives = 31/47 (65%)
 Frame = +1

Query: 508 NNEVDEPMFTQPLMYQKIRKTKPVLEKYADQLIAEGVVTAEEVKDVK 648
           +NE+DEP FTQP MY+ IR     L+ Y ++L+  G VT E++  ++
Sbjct: 505 HNEIDEPSFTQPKMYKVIRSHPSSLQIYQEKLLQSGQVTQEDIDKIQ 551


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = +1

Query: 277 RDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPRERRQSRGRDARL*RGCRMES 456
           R H   R    R HDR  A ++ R    R  R  R D   +RR+ R R+    +  R E 
Sbjct: 416 RQHRDERDDGRRQHDREDARELERKHRERKERESRED--EDRRRRRRREESRDKESRRER 473

Query: 457 HVPQGRCH*HRQLQEKRNNEVD 522
                R   HR  +E+R    D
Sbjct: 474 DEDDHRS--HRDYKERRRERDD 493


>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: LUC7 N_terminus
          Length = 402

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 271 HARDHTHRRQQPDRVHDRPQALQIFRLLHRRGPRCKRSDIPRERRQSRGRD 423
           H RD+  R +  DR HDR +     R   R   R +R    R R + R RD
Sbjct: 344 HRRDYDRRSRDRDRHHDRDREQD--RDYDRSHSRSRRRSRSRSRSRDRPRD 392


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 140 SGLALHHGVDGLQVRGVRANSQSNVLVGNAIQTLD 36
           S  A H GV GL+  GVR  S     + N++Q  D
Sbjct: 272 SSTAGHEGVQGLKALGVRDLSYRLAFIANSVQIAD 306


>At4g22030.1 68417.m03187 F-box family protein PF0064: F-box domain;
           similar to F-box protein family, AtFBX7 (GI:20197899)
           [Arabidopsis thaliana]
          Length = 626

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 52  ALPTRTLDWLFARTPRTWRPSTPWCRARPEPSSSTGE 162
           A P   +  +  + P+ ++P+T W   +PEP+ S  E
Sbjct: 221 AYPLPLVGTMLEKFPQEFKPATWWPETKPEPTHSRTE 257


>At5g28237.2 68418.m03423 tryptophan synthase, beta subunit,
           putative similar to SP|P14671 Tryptophan synthase beta
           chain 1, chloroplast precursor (EC 4.2.1.20)
           {Arabidopsis thaliana}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 372

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 639 FNLLSCDDSFRDQLVRVFLQYWFGLTNLLVHEGLSEH 529
           FN + CD  F+++L      Y    T L   E L+EH
Sbjct: 95  FNFVRCDHEFQEELTTALRDYVGRETPLYFAERLTEH 131


>At5g28237.1 68418.m03422 tryptophan synthase, beta subunit,
           putative similar to SP|P14671 Tryptophan synthase beta
           chain 1, chloroplast precursor (EC 4.2.1.20)
           {Arabidopsis thaliana}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 465

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 639 FNLLSCDDSFRDQLVRVFLQYWFGLTNLLVHEGLSEH 529
           FN + CD  F+++L      Y    T L   E L+EH
Sbjct: 95  FNFVRCDHEFQEELTTALRDYVGRETPLYFAERLTEH 131


>At3g50210.2 68416.m05490 2-oxoacid-dependent oxidase, putative
           strong similarity to partial cds of 2-oxoacid-dependent
           oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
          Length = 250

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 27  GTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGD 206
           G Y   L+RV N + +  VC    +    D VV+     +Q Y G   G +V    ++G+
Sbjct: 179 GVYESTLHRVINNSPQYRVCVAFFYETNFDAVVEPLDICKQKYPGGRGGCQVFKRAVYGE 238


>At3g50210.1 68416.m05491 2-oxoacid-dependent oxidase, putative
           strong similarity to partial cds of 2-oxoacid-dependent
           oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
          Length = 332

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 27  GTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVQGKTRAEQFYRGDNEGKKVMSILLHGD 206
           G Y   L+RV N + +  VC    +    D VV+     +Q Y G   G +V    ++G+
Sbjct: 261 GVYESTLHRVINNSPQYRVCVAFFYETNFDAVVEPLDICKQKYPGGRGGCQVFKRAVYGE 320


>At3g24120.2 68416.m03029 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 301 VGDDVYGPVRGVGGQVDRCIVSNTTP*P 218
           VG D +GP+ G     D C+V  T P P
Sbjct: 15  VGGDYHGPLDGTNLPGDACLVLTTDPKP 42


>At3g24120.1 68416.m03028 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 295

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 301 VGDDVYGPVRGVGGQVDRCIVSNTTP*P 218
           VG D +GP+ G     D C+V  T P P
Sbjct: 15  VGGDYHGPLDGTNLPGDACLVLTTDPKP 42


>At1g76520.2 68414.m08905 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 472 VLVERGSPFGSHVTNVHHGLGIVAVHVEYRSVY 374
           V  E+G PFG   +   +G+G VA+ +   S+Y
Sbjct: 128 VCKEKGGPFGDPESCQKYGMGYVALSMAMGSIY 160


>At1g76520.1 68414.m08904 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 472 VLVERGSPFGSHVTNVHHGLGIVAVHVEYRSVY 374
           V  E+G PFG   +   +G+G VA+ +   S+Y
Sbjct: 128 VCKEKGGPFGDPESCQKYGMGYVALSMAMGSIY 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,251
Number of Sequences: 28952
Number of extensions: 286141
Number of successful extensions: 894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)