Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021690
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 37 0.002
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 30 0.35
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.61
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 3.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.7
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 5.7
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 7.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.9
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 54 DKNFKMNLTTEIQADVNSLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIIAKFNQ 233
D + + NL ++ DV + + ++ +K L + + KAK +A Q L+ K +
Sbjct: 73 DNDARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEVAKAKAKAVEDQLALEEADK--E 130
Query: 234 ANKAKAEVPVTRAKK 278
A KAK E PV A K
Sbjct: 131 AKKAKTEAPVEAANK 145
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/43 (25%), Positives = 28/43 (65%)
Frame = +3
Query: 183 RAKNQQTLLDIIAKFNQANKAKAEVPVTRAKKMPLRNQQFKQM 311
R ++Q + DI+ +++ ++A V + ++ K+PL+N++F +
Sbjct: 35 RRYHRQEVADILNATSKSKHSEAVVEILKSAKVPLKNKEFSDL 77
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 0.61
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Frame = +3
Query: 93 ADVNSLVHQYLEKI-----DKSLAQTFMKKTKAKPRAKNQQTLLDIIAKFNQANK-AKAE 254
A ++ +V++ EK+ L K+ K +PR + + + +A K AKA
Sbjct: 229 AHLDRIVYESFEKVMFQVEGGELTVLLDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKAN 288
Query: 255 V--PVTRAKKMPLRNQQFK-QMGKFQQLRKKLKVQI----LVAPMMSHQNRHLSPTKQLK 413
+ P+T AKKM N+Q G + + V++ LV + +N+ +S +QL
Sbjct: 289 LAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVSDDEQLC 348
Query: 414 NLTLHQLRNKNHQM 455
L +H L + NH +
Sbjct: 349 FL-IH-LNDTNHNL 360
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 147 AQTFMKKTKAKPRAKNQQTLLDIIAKFNQANKAKAEVPVTR----AKKMPLRNQQFKQMG 314
A+ +KK K + + + L A+ N+A K K E + R +K L K
Sbjct: 63 AEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKE 122
Query: 315 KFQQLRKK 338
KF+++RKK
Sbjct: 123 KFKKMRKK 130
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 536 HKKKRNHQMTIVVMMNLRKRFHKNQLLHLPNFQSNQL 646
+++ R+ + IVVM ++++ H Q+LH +F L
Sbjct: 217 NQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTL 253
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 123 LEKIDKSLAQTFMKKTKAKPRAKNQQTLLDIIAKFN-QANKAKAEVPVTRAKKMPL 287
L ++K+LA+ + ++K K+ +L + A N +NK+ +EVP + K+ L
Sbjct: 1642 LSMLEKNLARVRAELEQSKK--KDSPAILSLEASKNTDSNKSNSEVPAAQVKEKKL 1695
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -1
Query: 328 SCWNFPICLNCWFLRGIFFARVTGTSXXXXXXXXXXAMMSKR-VCWFLARGFALV 167
+C N P L FL GIF A +T R +CW+ G A +
Sbjct: 161 ACRNGPSLLGLRFLAGIFEASITPAFINITAMWYRREEQPMRTLCWYAFNGIAQI 215
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 381 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 464
N+H+ P+K N L +L +K MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 171 KAKPRAKNQQTLLDIIAKFNQANKAKAEVPVTRAKKMPLRN 293
KA+ A N+ + L + N A + +P+T AKK + N
Sbjct: 309 KAQKHAINRISKLGKMITSNHAEEKLTTIPITEAKKESVSN 349
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 87 IQADVNSLVHQYLEKIDK-SLAQTFMKKTKAKPRAKN--QQTLLDIIAK 224
+++ V L++ +L++ AQTF+K+T K AK ++ LLD++++
Sbjct: 6 MKSKVCPLIYHFLQENGYVKTAQTFLKETGDKDLAKGKVKKNLLDLLSQ 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,134
Number of Sequences: 5004
Number of extensions: 33536
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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