Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021690
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.66 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 426 VMLSFLTAWLGLDA 385
           VMLS+ + WLGLDA
Sbjct: 214 VMLSWFSFWLGLDA 227


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 530 VHHKKKRNHQMTIVVMMNLRKRFHKNQLLHLPNFQSNQL 646
           VH++K   H+M   V     +R  K  L+ +P+   N L
Sbjct: 322 VHYRKPSTHKMAPWVRKIFIRRLPKLLLMRVPDDLLNDL 360


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 PRAKNQQTLLDIIAKFNQANKAKAEVPVTRAK 275
           P A + +   DII + ++   A+A V  TRA+
Sbjct: 176 PSAADDRMFDDIIQRLSKKANARAVVLFTRAE 207


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 PRAKNQQTLLDIIAKFNQANKAKAEVPVTRAK 275
           P A + +   DII + ++   A+A V  TRA+
Sbjct: 266 PSAADDRMFDDIIQRLSKKANARAVVLFTRAE 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,293
Number of Sequences: 438
Number of extensions: 1971
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)