Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021689
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 48 2e-06
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 37 0.003
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.004
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 35 0.010
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 35 0.010
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.052
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.052
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.069
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.091
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.12
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.12
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.16
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.21
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.28
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.28
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.49
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.49
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.64
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.85
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.0
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.0
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 3.4
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 4.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 4.5
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.5
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 6.0
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 6.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.0
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 7.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 47.6 bits (108), Expect = 2e-06
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS--------CTWKTNKSAANHSES 311
K+FIG L+ +TT+ LR FE++G V++C ++R + + T+K K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 312 *RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+ D R+ P T K+FVG + E R F +FG V++ ++
Sbjct: 224 EHHLDGKIIDPKRA--IPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 282 NKSAANHSES*RRVS-SWAGDQNRSGQEPEGP-STPTTKIFVGNLTDKTRAPEVRELFQK 455
N N++E+ ++ S A + N E P + K+F+G L +T +R+ F++
Sbjct: 126 NSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQ 185
Query: 456 FGTVVECDIVRN 491
FG V++C ++R+
Sbjct: 186 FGEVLDCTVMRD 197
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHLTRR 518
P+ + +F+G +T R P +R +F++FG+V + NY GF+ + RR
Sbjct: 398 PDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRR 451
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTV 233
+F+G ++ E LR +FE++G+V
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSV 432
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 327 SWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 488
S A D+ PEG +FV + + + E++++F KFGTV I+R
Sbjct: 81 STALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMR 134
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 35.1 bits (77), Expect = 0.010
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWGPD 700
CYRCG+ GHW + CP P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPN 205
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.1 bits (77), Expect = 0.010
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 509
T++FVG + + ++ + F+ +G +++C ++ +GFV +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEV 44
Score = 29.9 bits (64), Expect = 0.37
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++F+G + + T D+ F+ YG +++C ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTV 233
F++F+G LS T ++++R LFE GTV
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTV 70
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTV 467
++FVG L+ T+ E+R LF+ GTV
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTV 70
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.052
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLTRR 518
P+ T + +FVG L+ E++ LFQ FG +V I + GFV R
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNR 348
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVV 236
+F+G LS +E +L+ LF+ +G +V
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIV 330
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.052
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 506
+F+GNL E+ E F KFG + I+ +N FVH
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVH 340
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.069
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC-DIVRITVSCTWKTNKSAANHSES*R 317
+ +FI N+ + +E D++ LF++Y V+ C D +++ W N+S +++
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 318 R----------VSSWAGDQNRSGQEPEGPSTP----------TTKIFVGNLTDKTRAPEV 437
+ V S D+N P TP T ++V L + E+
Sbjct: 133 QGAFCLKRSILVHSVKSDKNTYLSSPGFYGTPQPLNQFTDPNNTAVYVHQLPENITTQEL 192
Query: 438 RELFQKFGTVVECDIVRNYGFVHLTRR 518
R F FG ++ + N G + +R
Sbjct: 193 RSYFLHFGEILYTQVNNNSGRIVFAQR 219
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.091
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 506
+F+GNL + E+RE + FG + + IV RN FVH
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVH 247
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 138 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*R 317
AG + I+IGN D T L+ FE++G + + R +C + S A+ +
Sbjct: 409 AGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFR-EKNCAFVNFTSLASAINAID 467
Query: 318 RVSSWAGDQN 347
R+ G +N
Sbjct: 468 RIKQKKGYEN 477
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR--NYGFVHLTRRA 521
I++GN D ++E F++FG + + R N FV+ T A
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLA 460
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 602 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 679
VR P +P Q CY+CGR GH +++C
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 635 QCYRCGRGGHWSKECPK 685
+CY CG GH ++EC K
Sbjct: 18 RCYNCGENGHQARECTK 34
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 626 DPEQ---CYRCGRGGHWSKECPKRWGP 697
+P+Q CY CG GH ++CP P
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNP 79
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 635 QCYRCGRGGHWSKEC 679
+CY CG+ GH S EC
Sbjct: 136 KCYSCGKIGHRSFEC 150
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 339 DQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
D N + PE P T++FV N++ + ++R F+ FG V + D+ N
Sbjct: 82 DYNENSLGPE----PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
++F+ N+S T LR F+ +G V + D+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDL 125
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*RRVSSW 332
F++F+GNL + + L F +Y ++V+ +VR T + +S + + +W
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKT--RGFGFVSFKDSDQFLKAW 87
Query: 333 AGDQNR-SGQEPEGPSTPTTKIFVGNLTDKTRAPEVR 440
+ G P S T+ + + +KT ++R
Sbjct: 88 REKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIR 124
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Frame = +3
Query: 363 PEGPSTPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFV 503
P STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 408 PTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFV 467
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFG 461
I+VGNL ++ ++ ELF+ FG
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYG 227
I++GNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.28
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 381 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
P +FV L T+ ++ +F +FG ++ C ++R+
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRD 278
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 399 VGNLTDKTRAPEVRELFQKFGTV 467
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 153 FKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIV 251
+ IF+G L T L LF KYG V++C I+
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRI 257
++++GNLS + +L+ + G V+ C+I+ +
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNL 100
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRP----LFEKYGTVVE 239
+++ NL+DK + DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTV 233
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 243 DIVRITVSCTWKT----NKSAANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNL 410
D +++ + C+ K N ++++ R S A +++ P++ +FVGNL
Sbjct: 176 DALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNL 235
Query: 411 TDKTRAPEVRELFQKFGTV 467
+T +++E F + G +
Sbjct: 236 DFETTDADLKEHFGQVGQI 254
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS 266
+F+ L+++ T +L FE+ G V + IVR +S
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKIS 277
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 613 PLPDTTRRQLHLHG-LSVDHHTVQLFD 536
PLPD T R+LHL+ L H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+ T +F+G LS + L FE+YGT+V ++
Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/69 (18%), Positives = 32/69 (46%)
Frame = +3
Query: 279 TNKSAANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKF 458
+ +++ E R+ + ++ +P S T +FVG L+ + + F+++
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 459 GTVVECDIV 485
GT+V ++
Sbjct: 287 GTIVGARVI 295
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTV 233
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +3
Query: 258 TVSCTWKTNKSAANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEV 437
T S + ++ ++N S S++ +++ S P P I V NLT +
Sbjct: 56 TRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEPLRTILVENLTRNVTKEHI 115
Query: 438 RELFQKFGTV 467
E+F +G +
Sbjct: 116 AEIFGIYGLI 125
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.6
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 16 FCSGVRHVYCVGNSWS 63
FC G+ +YC+G+S++
Sbjct: 97 FCKGIYEIYCIGDSFT 112
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS 266
+F+ LS T E+D+ F +YG + +VR V+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVT 137
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTV 233
+FI NLS K T ++ LF +YG V
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV 38
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 7 FFFFCSGVRHVYCVGNSWSLFGVHIFNLCYILLFFV 114
FFFFC G+ +G+ +GV++ + + L V
Sbjct: 1495 FFFFCLGIMLRPILGDRSKTYGVYLAGVAHFLFVCV 1530
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 369 GPSTPTTKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFV 503
G +++F+G+L K+ + + ++F+ +G + + + NYGFV
Sbjct: 357 GQFPSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFV 402
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 470 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 375
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
C+ C GH SK+CP
Sbjct: 89 CHNCKGNGHISKDCP 103
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 381 PTTKIFVGNLTDKTRAPEVRELFQKFGTV 467
PT ++VGNL A V F +GTV
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTV 613
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
CY+CG+ H +EC R
Sbjct: 1806 CYKCGKADHNLRECKLR 1822
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
CY+CG+ H +EC R
Sbjct: 1806 CYKCGKADHNLRECKLR 1822
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
T +++ NL + E +LF +FG + +V++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD 295
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+FI NL D+ + L+ F +GT+ I+
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,312
Number of Sequences: 5004
Number of extensions: 59508
Number of successful extensions: 277
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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