Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021689
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 44 9e-05
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 44 9e-05
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 42 5e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 8e-04
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 38 0.006
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 37 0.014
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 36 0.042
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.042
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 36 0.042
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.056
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 34 0.097
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 33 0.17
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 33 0.17
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 33 0.22
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 33 0.30
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 33 0.30
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.30
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 32 0.39
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 32 0.39
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037) 31 0.68
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.68
SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 31 0.90
SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08) 31 0.90
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 31 1.2
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 1.2
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.2
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 30 1.6
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046) 30 1.6
SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 30 2.1
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 30 2.1
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 30 2.1
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.1
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05) 29 2.8
SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 29 2.8
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 2.8
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59232| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.6
SB_56107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_52251| Best HMM Match : rve (HMM E-Value=1.1e-34) 29 3.6
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_42176| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37) 29 3.6
SB_34077| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_21117| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 29 3.6
SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05) 29 3.6
SB_39547| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34655| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 3.6
SB_28775| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_13663| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 29 3.6
SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 29 3.6
SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38) 29 3.6
SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.8
SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 29 4.8
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 28 6.4
SB_29962| Best HMM Match : CBFB_NFYA (HMM E-Value=3.4) 28 6.4
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37) 28 6.4
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 28 6.4
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 28 6.4
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 28 6.4
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 28 8.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 8.4
SB_45492| Best HMM Match : zf-CCHC (HMM E-Value=2.9) 28 8.4
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51) 28 8.4
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 8.4
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013) 28 8.4
SB_15198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/61 (44%), Positives = 41/61 (67%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 685
FD D DA++EL+G + GQ ++V+L+ R RP MG E+CY CGR GH++++C +
Sbjct: 75 FDDRRDAEDAVRELDGRYICGQRVRVELAKGPSRGRPRMGSNEKCYECGRVGHFARDCTR 134
Query: 686 R 688
R
Sbjct: 135 R 135
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 685
F+ D DA++EL+G + GQ +V+L+ R RP E+CY CGR GH++++C +
Sbjct: 45 FEDRRDAEDAVRELDGRYICGQRARVELAKGPSRGRPRQASNEKCYECGRVGHFARDCTR 104
Query: 686 R 688
R
Sbjct: 105 R 105
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 44.4 bits (100), Expect = 9e-05
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----------ITVSCTWKTNK--SAAN 299
KIFIG L+ TTE L+ F ++GT+V+C I++ +T + N+ +
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVLKKKD 110
Query: 300 HSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQK------FG 461
H R + PE S T KIFVG L T +++E F G
Sbjct: 111 HVLDDREIEPKRSVPRDESGAPEAMS-KTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMG 169
Query: 462 TVVECDIVRN 491
V++ D+ R+
Sbjct: 170 EVIDVDLKRD 179
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 497
KIF+G L T +++ F ++GT+V+C I++ G
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDG 86
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 44.4 bits (100), Expect = 9e-05
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHS--ES*RRV 323
T +F+GN+ TT DL+ FE+YG V++ DI + + + + A S ++ R++
Sbjct: 248 TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKM 307
Query: 324 SSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 488
+NR + G P I+VG +T+ +V F ++G V + I R
Sbjct: 308 DREYVGRNRV-KVGFGKVNPINTIWVGGVTNSLSEQQVERHFGRYGRVTKVVINR 361
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 497
T +FVGN+ T +++E F+++G V++ DI + G
Sbjct: 248 TRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 297 NH--SES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 467
NH S+S R + A ++R P + +IF+GNL TDK ++ E+F + G V
Sbjct: 14 NHQKSKSPDRDRNRAKLESRYETNKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKV 73
Query: 468 VECDIVRNYGFV 503
+ C + N+GFV
Sbjct: 74 LGCSLHANFGFV 85
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 41.1 bits (92), Expect = 8e-04
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*RRVSSWA 335
K+F+G LS +TT+ L+ F KYG +V DI + T + A + + + A
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDAL--TGRPRGFAFVQFK--HQSEADA 85
Query: 336 GDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQK-FGTVVECDIVRNY 494
D + + P KIFVG L +T ++RE F K + V E + + +
Sbjct: 86 IDPKPAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEH 139
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRIT--VSCTWKTNKSAANHSES*RRV 323
T +F+GNL + DLR FEK+G V++ DI R T+ K A + +
Sbjct: 236 TRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKC 295
Query: 324 SSWAGDQNRSG-QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 479
+ R+ + G S TT+++VG L PE+ F +FG + D
Sbjct: 296 AMQGQCIGRNHIKIGYGRSQQTTRLWVGGLGPWISIPELEREFDRFGAIRRID 348
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 488
PE T +FVGNL ++R F+KFG V++ DI R
Sbjct: 229 PEEDPKATRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKR 270
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 530 DAIKELNGMMVDGQPMKVQLSTSRVR-----QRPGMGDPEQCYRCGRGGHWSKECPK 685
+A+ +N + G+ +K ++ R +R D +CY CG GGH S ECPK
Sbjct: 66 NAVAAVNKKQMFGRTIKCTIAKDNGRAPEFIRRRDYPDKSRCYECGEGGHLSYECPK 122
Score = 35.5 bits (78), Expect = 0.042
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+++GNL T +DL +FE+YG VV+ I+R
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILR 43
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 38.3 bits (85), Expect = 0.006
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*RRVSS 329
T ++ + L+ + E LR FEK+G + EC ++R V T +S + + +
Sbjct: 108 TLELSVIPLTQASAEG-LRQHFEKFGELKECVVMRDPV-----TKRSRGFGFLTFKDPKA 161
Query: 330 WAGDQNRSGQEPEGPS--TPTTKIFVGNLTDKTRAPEVRELFQKFGTV 467
N QE +G T T KIF+G L+ T ++++ F +FG V
Sbjct: 162 VDVVLNSGAQELDGKKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 503
T++FVG L+ +T+ ++ +F +G ++ CD+ YGF+
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFI 44
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
R ++F+G LS +T DL +F YG ++ CD+
Sbjct: 4 RGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL 37
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+IF+ + +TTE++LR FE+YG V E IVR
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVR 41
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 369 GPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G + +IFV +T E+R F+++G V E IVR+
Sbjct: 2 GDQDISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRD 42
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 661
F + ++ DAI EL+G DG+ MKV + SR ++ G G YR G GG
Sbjct: 277 FGSKKNMEDAINELDGQEFDGRSMKVNQARSREQRGGGRGGG---YRSGGGG 325
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 664
F + +++ AI + +G +DG+PMKV + R +R G G YR G GG+
Sbjct: 57 FGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPR-GERGGGGSQGGGYRSGGGGY 108
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTV 233
K +IGNL K EADL+ F +Y V
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVV 256
>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 569 QPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKR 688
QP Q +S +QRP C CG GHW ++CP R
Sbjct: 1029 QPSYQQYGSSFGQQRPNEQQRGSCRCCGAPGHWWRDCPVR 1068
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 36.3 bits (80), Expect = 0.024
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECP 682
G G + C++CG GH+S+ECP
Sbjct: 398 GRGQSDTCHKCGETGHYSRECP 419
Score = 29.9 bits (64), Expect = 2.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
C++CG GH+++ECP
Sbjct: 382 CHKCGEVGHFARECP 396
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 35.9 bits (79), Expect = 0.032
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWGP 697
CY CG GH+++ECPKR P
Sbjct: 627 CYDCGEEGHFARECPKRLPP 646
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 35.5 bits (78), Expect = 0.042
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+F+G + E DLRP+FE YG + E I++
Sbjct: 171 KLFVGQVPRTWEEKDLRPIFEPYGQIYELTILK 203
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+F+G +S E DLR +F +GT+ E ++R
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLR 247
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+FVG ++ + ++R +F FGT+ E ++RN
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.5 bits (78), Expect = 0.042
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+F+ L+ TT+ DL +F ++GT++ C+++R
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIR 153
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKI-FVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
+R G P+ P + FV L T ++ +F +FGT++ C+++R+
Sbjct: 105 DRIGDIPDADIKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRD 154
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTW 275
++FIGNL +AD+ +F KYGT++E + +S +W
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE---IPTFISSSW 394
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 473
++ G+ + + ++F+GNL + +V E+F K+GT++E
Sbjct: 343 SKEGRMAARSAPDSHQVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 35.1 bits (77), Expect = 0.056
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*RRVSSWAG 338
+F+G L+ T E L+ FE++G V I+R + + N +
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLG--YSRNYGFVLFKDDGPSKEVLKK 139
Query: 339 DQNRSGQEPE-GPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
+G+ + G S I+VG L VRE F+KFG + + N
Sbjct: 140 SHVINGKTVDVGKSRNFRVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIEN 191
Score = 35.1 bits (77), Expect = 0.056
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Frame = +3
Query: 147 RTFK-IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAANHSES*R-- 317
R F+ I++G L TE +R F+K+G + + T S KT +
Sbjct: 154 RNFRVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIENT-SVGAKTGXXXXEEDQEILGC 212
Query: 318 RVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
V+ A S ++ + K+ V +L T E+RE F+K G + D++ N
Sbjct: 213 PVTVRARSGKESNEDLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLIN 270
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G R +F+ NLS+ T E D+ F YG V + I+
Sbjct: 315 GVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHIL 351
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-------RNYGFV 503
N + P+ + +FVG L T +++ F++FG V I+ RNYGFV
Sbjct: 66 NSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFLGYSRNYGFV 125
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 34.7 bits (76), Expect = 0.073
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWGPDR 703
CY+CG+ GH+++ECP G R
Sbjct: 202 CYKCGKYGHFARECPDAGGSGR 223
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLTRR 518
T ++FVGNL D E++E+F+K+G V E I + +GF+ L R
Sbjct: 50 TGRCRLFVGNLIDCDEE-EMKEMFKKYGEVAEVFINKEKGFGFIRLDTR 97
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVE 239
++F+GNL D E +++ +F+KYG V E
Sbjct: 54 RLFVGNLID-CDEEEMKEMFKKYGEVAE 80
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 34.3 bits (75), Expect = 0.097
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 584 QLSTSRVRQRPGMGDPEQCYRCGRGGHWSK--ECPKR 688
++++ R RQ G + CYRCG GH+SK EC R
Sbjct: 1510 KVNSLRGRQEKEKGKGKHCYRCGMEGHFSKDPECKAR 1546
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 34.3 bits (75), Expect = 0.097
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
K+FVGN+ K RA E+++ F FG VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+F+GN+ K +L+ F +G VV I+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQII 111
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 34.3 bits (75), Expect = 0.097
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3
Query: 174 LSDKTTEADLRPLFEKYGTVVECDIV 251
LS TTE DLRP+FEKYG V IV
Sbjct: 188 LSLYTTERDLRPVFEKYGPVEAIQIV 213
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 664
F + ++ AI E +G DG+PMKV + R + G G YR G GG+
Sbjct: 52 FGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGAG-GSRAGGYRSGGGGY 103
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKT 281
K+F+G L+ +TT LR FE YG + D+V I S T K+
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELT--DVVVICDSATKKS 54
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 33.5 bits (73), Expect = 0.17
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKEC 679
G G C++CG+ GHW+K C
Sbjct: 440 GGGQAGTCFKCGQEGHWAKNC 460
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
TTK++VGNL + E+ F+KFG + + + RN
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARN 38
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
T K+++GNL ++L FEK+G + + + R
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVAR 37
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 330 WAGDQNRSGQEPEGPSTPTTKI-FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVH 506
WA Q +EP+ + K+ ++ NL+ +++E + ++G V +++Y FVH
Sbjct: 313 WADPQ----EEPDDDAMKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVH 368
Query: 507 LTRR 518
T R
Sbjct: 369 FTER 372
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 33.1 bits (72), Expect = 0.22
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKEC 679
E CYRCG+ GH++++C
Sbjct: 121 ESCYRCGKSGHFARDC 136
Score = 31.1 bits (67), Expect = 0.90
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKECPK 685
D +CY+CG GH ++CP+
Sbjct: 138 DDTKCYKCGNTGHIRRDCPE 157
Score = 29.1 bits (62), Expect = 3.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
CYRC GH++++CP
Sbjct: 78 CYRCQETGHFARDCP 92
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWGPDR 703
CY+CG+ H + CP G D+
Sbjct: 4 CYQCGKTDHLASNCPDADGDDK 25
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKEC 679
D CY CG+ GH S++C
Sbjct: 24 DKPVCYSCGKKGHISRDC 41
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 664
F + ++ AI E +G +DG+PMKV + R G G YR G GG+
Sbjct: 144 FGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPR-GDSGGGGSQGGGYRSGGGGY 195
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 32.7 bits (71), Expect = 0.30
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
C+ CG GHW++ CP R
Sbjct: 536 CFHCGMRGHWARSCPYR 552
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.7 bits (71), Expect = 0.30
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
++++GNL E DL +F KYG + + D+
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDL 292
Score = 31.1 bits (67), Expect = 0.90
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 497
+++VGNL R ++ ++F K+G + + D+ G
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRG 297
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCG-RGGH 664
D A+K LNG V G+ +K+ S SR R G G YR G RGG+
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKIAPSISRGRDGGG-GGYRGGYRGGYRGGY 158
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 503
++++G L T +VR F+ +G + + ++ NYGFV
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFV 41
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.39
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Frame = +3
Query: 186 TTEADLRPLFEKYGTVVECDIV--------RITVSCTWKTNKSAANHSES*RRVSSWAGD 341
TTE++++ F ++G + C++ R +K ++ A N + R+ +
Sbjct: 126 TTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCE 185
Query: 342 QNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI---VRNYGFV 503
R + E + P K+FVG L + T + E F +FG V + I R++GFV
Sbjct: 186 V-RLPRPKEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFV 240
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN 299
K+F+G L + TTE L F ++G V + I + + T S AN
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFASVAN 247
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RITVSCTWKTNKSAANHSES*RRVSSW 332
++I L TT+ DL L KYGT++ + + T C + + + V++
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
Query: 333 AGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
++ + P T +++ NL + +F K+G V+ I+R+
Sbjct: 162 VNKGIQAQMAKQQEQDP-TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRD 213
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.9 bits (69), Expect = 0.52
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+++ N+ + EA+ R FE YG +V C ++R
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLR 166
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 31.9 bits (69), Expect = 0.52
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKEC 679
+ C+RCG GHW+++C
Sbjct: 678 DTCFRCGEEGHWAEDC 693
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTV 233
K+FIG L+ TTE DL+ F YG V
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
Length = 955
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 202 LDRYSKNTVRS*NAISSELRFRAHGKRTSRPRTIQNLNGELVHGQAIKIEAAKSRKGRRR 381
L RY K T+R+ + + ++ +RT + NGE VHG ++ + +G R
Sbjct: 494 LTRYPKQTLRAVRRMQQDAHYKDKARRTVED--LSRDNGERVHGTVRRLLSDNKERGSMR 551
Query: 382 QPLKYS 399
+ L S
Sbjct: 552 KLLTIS 557
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 315 RRVSSWAGDQNRSGQEPEGPSTPT---TKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
+R SS + ++RS +PT TK++V +LT V+E+F +G V D+
Sbjct: 1130 KRSSSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDL 1188
>SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 196
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 524 VNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
+ + +++ ++ D Q L+ +RV++R CY CGR GH S+ C
Sbjct: 107 LTEGLQKQQQVLADTQASLATLA-NRVQRREARWSDLTCYTCGRVGHISRFC 157
>SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08)
Length = 59
Score = 31.1 bits (67), Expect = 0.90
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 620 MGDPEQCYRCGRGGHWSKEC 679
M + CY+CG+ GH++++C
Sbjct: 4 MSSSKDCYKCGKTGHFARDC 23
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
I+V N+ +++ +F K+G + + +R+YGFV+ +R
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKR 45
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECD 245
+ + + NLS +T+ DL+ F KYG V D
Sbjct: 798 YSVIVENLSSRTSWQDLKDYFRKYGKVTYAD 828
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 685
FD D DA+ +LNG + G+ + V+ S R + G + R GR G
Sbjct: 729 FDDHRDAEDAVHDLNGRDLIGERVVVEFSKGRRSEGGGRDRRDFSGRGGRDGGRRPMWLD 788
Query: 686 RWGP 697
++GP
Sbjct: 789 KYGP 792
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCT 272
+ K+F+G L++ TTE +R F+ + E D+ ++++ T
Sbjct: 6 KLMKLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKT 47
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 30.7 bits (66), Expect = 1.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 635 QCYRCGRGGHWSKECPKRWG 694
+C++C GH+++ECP G
Sbjct: 488 KCFKCNESGHFARECPNSGG 507
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECP 682
G G C++C GH+++ECP
Sbjct: 459 GGGGSRTCHKCNEEGHFARECP 480
Score = 29.9 bits (64), Expect = 2.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
CY+C GH+++ECP
Sbjct: 521 CYKCNETGHFARECP 535
Score = 29.9 bits (64), Expect = 2.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
CY+C GH+++ECP
Sbjct: 603 CYKCNETGHFARECP 617
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECP 682
G C++C + GH+++ECP
Sbjct: 548 GGSSDSTCFKCQQTGHFARECP 569
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECP 682
G C++C + GH+++ECP
Sbjct: 630 GGSSDSTCFKCQQTGHFARECP 651
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPK 685
G P+ C RC GH KEC K
Sbjct: 198 GQPQSCLRCSEIGHGVKECTK 218
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTV 233
H T I + NLS++T E+DL+ LF G +
Sbjct: 178 HETATIRVTNLSEETRESDLQELFRPLGPI 207
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+++ NLS T ADL+ F +YG VV IV
Sbjct: 351 LWVANLSSITRAADLKTRFSQYGKVVGAKIV 381
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 626 DPEQCYRCG--RGGHWSKECP 682
DPE C+ CG RG H KECP
Sbjct: 136 DPETCFGCGDRRGPHPWKECP 156
>SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046)
Length = 338
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC R GH + +C
Sbjct: 73 RVQQKPDSAGPKFDGRCHRCNRQGHKAADC 102
>SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 382
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 572 PMKVQLSTSRVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
P + ++ RV+Q+P P+ +C+RC + GH + +C
Sbjct: 207 PDQAGVNQLRVQQKPDSAGPKFDGRCHRCNKQGHKAADC 245
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+R K++IGNL+ + E ++ FE++G V + DI+R
Sbjct: 6 NRGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILR 41
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+++GNL + E+ + F++FG V + DI+R+
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRD 42
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
F+IF G+L + T+ L F KY + ++ IVR
Sbjct: 217 FRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVR 250
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 29.9 bits (64), Expect = 2.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
CY+C GH+++ECP
Sbjct: 26 CYKCNETGHFARECP 40
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECP 682
G C++C + GH+++ECP
Sbjct: 53 GGSSDSTCFKCQQTGHFARECP 74
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+FI NLS +T+ ++ LF+++G + C +V
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVV 448
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 339 DQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
D N S + +F+ NL+ + + LF++FG + C +V
Sbjct: 400 DDNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVV 448
>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
Length = 601
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 551 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKE 676
G VD P++ Q S V+ +CYRCGR GH S +
Sbjct: 98 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGHRSSD 133
>SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 551 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKE 676
G VD P++ Q S V+ +CYRCGR GH S +
Sbjct: 456 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGHRSSD 491
>SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 357
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 524 VNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
+ + ++ ++ D Q L+ +RV+ R CY CGR GH S+ C
Sbjct: 268 LTEGLQRQQQVLADTQASLATLA-NRVQGREARWSDLTCYTCGRVGHISRFC 318
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
I++G+L+ T+ L+ +FE++GT+ D++
Sbjct: 543 IWVGHLAKIVTQDTLQGIFEEHGTITSIDLI 573
>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 584 QLSTSRVRQRPGMGDPE---QCYRCGRGGHWSKE 676
++ T V Q+ G+ + + +CYRCGR GH S +
Sbjct: 178 KVDTPPVEQQSGISNVKSEVECYRCGRKGHRSSD 211
>SB_59232| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 356
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 110 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 139
>SB_56107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 508
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 119 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 148
>SB_52251| Best HMM Match : rve (HMM E-Value=1.1e-34)
Length = 863
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 182 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 211
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 1007 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 1036
>SB_42176| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 612
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37)
Length = 1393
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 247 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 276
>SB_34077| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 403
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 110 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 139
>SB_21117| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 438
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 170 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 199
>SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 40 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 69
>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 168
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 644 RCGRGGHWSKECPKRW 691
+C R GHW+KEC W
Sbjct: 24 KCLRVGHWAKECRSAW 39
>SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05)
Length = 437
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 599 RVRQRPGMGDPEQCYRCGRGGHWSKE 676
R R+ G + C RCG GH+SKE
Sbjct: 174 RGREEKEKGKGKHCNRCGMEGHFSKE 199
>SB_39547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
+FV NL + E+ ELF K G V + +V N
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTN 205
>SB_34655| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 297
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPK 685
G P C RC + GH+ K+C +
Sbjct: 226 GQPPSCVRCSQIGHYVKDCTR 246
>SB_28775| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 295
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 188 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 217
>SB_13663| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 356
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 70 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 99
>SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 1116
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 148 RVQQKPDSAGPKFHGRCHRCNKQGHKAADC 177
>SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)
Length = 899
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSAGPKFDGRCHRCNKQGHKAADC 219
>SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 358
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 320 DHCFYCGSSEHWARGCRKR 338
>SB_20746| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 444
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 406 DHCFYCGSSEHWARGCRKR 424
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 758 DHCFYCGSSEHWARGCRKR 776
>SB_7563| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 195
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 157 DHCFYCGSSEHWARGCRKR 175
>SB_52218| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 175
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 137 DHCFYCGSSEHWARGCRKR 155
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLTRRA 521
T ++VG L K ++R+ F +FG + +V +N FV T RA
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRA 350
>SB_17009| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 268
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 230 DHCFYCGSSEHWARGCRKR 248
>SB_14477| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 402
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 364 DHCFYCGSSEHWARGCRKR 382
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKR 688
+ C+ CG HW++ C KR
Sbjct: 406 DHCFYCGSSEHWARGCRKR 424
>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
C CG+GGH++K C +
Sbjct: 199 CNNCGKGGHYAKVCKSK 215
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+FI +L + T+ADL F+ +GTV+ +
Sbjct: 231 LFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+FI +L + T+ADL F+ +GTV+ +
Sbjct: 279 LFIYHLPQEFTDADLMQTFQPFGTVISAKV 308
>SB_29962| Best HMM Match : CBFB_NFYA (HMM E-Value=3.4)
Length = 172
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 286 LFVF-HVHETVILTISHSTTVPYFSNSGLRSASVVLSERFPMKILKVR 146
L VF ++H+T IL I T Y S SGL++ + +ILK+R
Sbjct: 33 LIVFWYIHKTKILRIREWVTESYKSVSGLQNPKNPTNPLVGYRILKIR 80
>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
Length = 700
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 551 GMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 664
G VD P++ Q S V+ +CYRCGR GH
Sbjct: 451 GGKVDTPPIEQQSGISNVKSEV------ECYRCGRKGH 482
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 16 FCSGV--RHVYCVGNSWSLFGVHIFNLCYILLFFVHSNP 126
F SG+ H+ W + +H+ N Y+L F S P
Sbjct: 196 FSSGIYIHHLGYKATFWGILSLHLINFIYLLFFLPESMP 234
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 304 EWFAADLFVF-HVHETVILTISHSTTVPYFSNSGLRSASVVLSERFPMKILKVRCP 140
EW A L F ++ T+ L ++ T+P S SG R A ++ + L+ CP
Sbjct: 1802 EWEPARLARFTFLNSTLDLNVTFGDTLPESSKSGPRLAHALIQDSIADTTLQKMCP 1857
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+ I NL E DL+ L + YG V+ C+I R
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNIER 152
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 560 VDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 685
+D + ++ R Q P GD CY CG GH + C K
Sbjct: 345 LDSDVGQALIARGRRAQEP-CGDRPTCYNCGERGHVAIGCRK 385
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Frame = -3
Query: 671 WTSGPRG-----HSGSTARGRPCPAAAGHDSSTT-----APSWAVRRPSYRST 543
W+ G RG H + RPC A H ++TT P+ A PS R+T
Sbjct: 291 WSQGARGLGLLGHGRADIEPRPCACAPRHRAATTWFRAAGPTTATASPSRRAT 343
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+++GNL + +L+ +F +YG+++E +
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKV 646
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+I+I ++ E D++ +FE +G VV C +
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSL 230
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 560 VDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
+D + ++ R Q P GD CY CG GH + C
Sbjct: 88 LDSDVGRAPIARGRRDQEPS-GDRPTCYNCGERGHVAIGC 126
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
T TK+FVG + ++ +R+ F +FG + E ++++
Sbjct: 7 TKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKD 44
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQL 589
F+ + N A ++LNG +VDG+ ++V L
Sbjct: 131 FNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_45492| Best HMM Match : zf-CCHC (HMM E-Value=2.9)
Length = 77
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 584 QLSTSRVRQRPGMGDPEQCYRCGRGGHWSKE 676
++++ R R+ G + CYRCG G++ K+
Sbjct: 42 KVNSLRGREEKEKGKGKHCYRCGMEGYFRKD 72
>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
Length = 477
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 MMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRC--GRGGHWSKECPKRW 691
++V+ +P +LS S+ + + E YR G GG W P++W
Sbjct: 168 LVVENKPSTRRLSKSQEDKLRRQWEQENYYRWRRGDGGQWGDSDPRQW 215
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++++G+L TEA ++ +FE +GTV ++
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLI 274
>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 554 MMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRC--GRGGHWSKECPKRW 691
++V+ +P +LS S+ + + E YR G GG W P++W
Sbjct: 168 LVVENKPSTRRLSKSQEDKLRRQWEQENYYRWRRGDGGQWGDSDPRQW 215
>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
Length = 388
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 584 QLSTSRVRQRPGMGDPE---QCYRCGRGGHWSKE 676
++ T + Q+ G+ + + +CYRCGR GH S +
Sbjct: 176 KVETPPIEQQSGIFNVKSEVECYRCGRKGHRSSD 209
>SB_15198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 599 RVRQRPGMGDPE---QCYRCGRGGHWSKEC 679
RV+Q+P P+ +C+RC + GH + +C
Sbjct: 190 RVQQKPDSVGPKFDGRCHRCNKQGHKAADC 219
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,338,990
Number of Sequences: 59808
Number of extensions: 488490
Number of successful extensions: 2134
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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