Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021689
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.6  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 208 RYSKNTVRS*NAISSELRFRAHGKRTSRPRTIQNLNGE 321
           RYS++  R   +  +E  +R +GK TS+ R+   +  E
Sbjct: 260 RYSRSREREQKSYKNEREYRKYGK-TSKERSRDRMERE 296


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  IYCYSLYIVTHNLKCRAPYFQNLH 166
           +Y  +L  VTHNL   +P  +NL+
Sbjct: 252 VYGMALSPVTHNLYYNSPSSENLY 275


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 536 IKELNGMMVDGQPMKVQLSTSR 601
           ++ LNG+   G+P  +QL + R
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQR 336


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 295 AADLFVFHVHETVILTISHSTTVPYFSNSG 206
           A D FVF     +  TI     V YF+  G
Sbjct: 275 ALDFFVFLSFAFIFATIIQFAVVHYFTKYG 304


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  LVFIFLTCVIYCYSLYIVTHNLKC 139
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  LVFIFLTCVIYCYSLYIVTHNLKC 139
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,176
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)