Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021689
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 48 5e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 45 4e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 45 4e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 0.001
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 40 0.001
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 39 0.003
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 39 0.003
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 39 0.003
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 39 0.003
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 38 0.005
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 38 0.005
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 38 0.006
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 38 0.006
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.006
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.009
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.020
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.020
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 36 0.026
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.026
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.026
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.026
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.034
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.034
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.034
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 36 0.034
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 36 0.034
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 36 0.034
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 36 0.034
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.034
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.034
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 35 0.045
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.045
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.045
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.045
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.045
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.045
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 35 0.045
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.045
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 35 0.045
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 35 0.060
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 35 0.060
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 35 0.060
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.060
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 35 0.060
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 35 0.060
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.060
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.060
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.060
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 34 0.079
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 34 0.079
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 34 0.079
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 34 0.079
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 34 0.079
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.079
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.10
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 34 0.10
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 33 0.14
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.14
At3g48750.1 68416.m05324 cell division control protein 2 homolog... 33 0.14
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 33 0.14
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.14
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.14
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.14
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 33 0.18
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.24
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.24
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 33 0.24
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 33 0.24
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.32
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 32 0.32
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.32
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 32 0.32
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 32 0.32
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.32
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 32 0.42
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 32 0.42
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 32 0.42
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.42
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 32 0.42
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.56
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.56
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.56
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 31 0.56
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.74
At5g03900.2 68418.m00368 expressed protein predicted protein, Sy... 31 0.74
At5g03900.1 68418.m00367 expressed protein predicted protein, Sy... 31 0.74
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.74
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.74
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.74
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.74
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.74
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.74
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.74
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.74
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.74
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.74
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.74
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.74
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 0.98
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 31 0.98
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 31 0.98
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 31 0.98
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.98
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.98
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 31 0.98
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 31 0.98
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 1.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 30 1.3
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 30 1.3
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 1.3
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 30 1.3
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 30 1.3
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 1.3
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.3
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 30 1.3
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 30 1.3
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.3
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.7
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 30 1.7
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 30 1.7
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 30 1.7
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 30 1.7
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 1.7
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.7
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 30 1.7
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 1.7
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 1.7
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 30 1.7
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.7
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 1.7
At1g76540.1 68414.m08907 cell division control protein, putative... 30 1.7
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.7
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.7
At1g20930.1 68414.m02621 cell division control protein, putative... 30 1.7
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.3
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 29 2.3
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 2.3
At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 29 2.3
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 2.3
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 29 3.0
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 29 3.0
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.0
At3g13460.2 68416.m01694 expressed protein contains Pfam profile... 29 3.0
At3g13460.1 68416.m01693 expressed protein contains Pfam profile... 29 3.0
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g48240.1 68418.m05960 hypothetical protein 29 3.9
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 3.9
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 3.9
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 3.9
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 3.9
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 29 3.9
At2g01930.2 68415.m00128 expressed protein 29 3.9
At2g01930.1 68415.m00127 expressed protein 29 3.9
At1g73690.1 68414.m08533 cell division protein kinase, putative ... 29 3.9
At1g18040.1 68414.m02231 cell division protein kinase, putative ... 29 3.9
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 28 5.2
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 5.2
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 5.2
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 28 5.2
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 5.2
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 5.2
At1g14685.3 68414.m01750 expressed protein 28 5.2
At1g14685.2 68414.m01749 expressed protein 28 5.2
At1g14685.1 68414.m01748 expressed protein 28 5.2
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 6.9
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 28 6.9
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 6.9
At1g68120.1 68414.m07781 expressed protein 28 6.9
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 28 6.9
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK... 27 9.1
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 27 9.1
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 9.1
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 9.1
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 9.1
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 27 9.1
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 27 9.1
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 27 9.1
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 27 9.1
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 27 9.1
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 27 9.1
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 27 9.1
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 27 9.1
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 27 9.1
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 9.1
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 27 9.1
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 27 9.1
At1g22480.1 68414.m02809 plastocyanin-like domain-containing pro... 27 9.1
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 9.1
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 48.4 bits (110), Expect = 5e-06
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN---------HSES 311
+F+GN +T ++DL LF+KYG V D+ ++ + A +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 312 *RRVS-SWA-GDQNRSGQEPEGPST--PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 476
RR+S WA G++ R + + PS PT +FV N +T+ ++ + F+ +G V
Sbjct: 64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV 123
Query: 477 DIVRNYGFV 503
I RN+ FV
Sbjct: 124 RIRRNFSFV 132
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVH 506
+FVGN +TR ++ LF K+G V D+ Y FV+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVY 41
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 45.2 bits (102), Expect = 4e-05
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----ITVSC---TWKTNKSA---- 293
T K+F+G++ TE ++RP FE++G V+E +++ C + T+K A
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 294 -ANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 470
A H++ + + E E T K+FVG+L + EV E+F +FG V
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 471 ECDIVRN 491
+ ++R+
Sbjct: 239 DVYLMRD 245
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
G FK+F+G+L+ + TE ++ +F ++G V + ++R
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMR 244
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 45.2 bits (102), Expect = 4e-05
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----ITVSC---TWKTNKSA---- 293
T K+F+G++ TE ++RP FE++G V+E +++ C + T+K A
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 294 -ANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVV 470
A H++ + + E E T K+FVG+L + EV E+F +FG V
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 471 ECDIVRN 491
+ ++R+
Sbjct: 239 DVYLMRD 245
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
G FK+F+G+L+ + TE ++ +F ++G V + ++R
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMR 244
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRIT 260
N R KIF+GNL+ +TT DLR FE++G VV+ ++V T
Sbjct: 6 NHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSET 47
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLT 512
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV +
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFS 52
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR---QRPGMGDPE---QCYRCGRGGHW 667
F D +DA L+G DG + V+ S R G P +C+ CG GHW
Sbjct: 51 FSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 668 SKEC 679
+++C
Sbjct: 111 ARDC 114
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
++++G LS +T DL LF +YG V + D+ R
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR 44
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 635 QCYRCGRGGHWSKECPKRWGPDR 703
+CYRCG GH + C P +
Sbjct: 122 KCYRCGERGHIERNCKNSPSPKK 144
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 503
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYRCGRGGHWSKEC 679
D +DA L+G DG + V+ S R G P +C+ CG GHW+++C
Sbjct: 56 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
++++G LS +T DL LF +YG V + D+ R
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR 44
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 566 GQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
GQ Q + + + GD CY+CG+ GHWS++C
Sbjct: 321 GQSSNQQFQSGQAKSTSSTGD---CYKCGKAGHWSRDC 355
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 581 VQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKRWG 694
VQ T V+ GD C++CG+ GHWS++C + G
Sbjct: 254 VQSDTGPVKSTSAAGD---CFKCGKPGHWSRDCTAQSG 288
Score = 35.1 bits (77), Expect = 0.045
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +2
Query: 635 QCYRCGRGGHWSKEC 679
+CY+CG+ GHWS++C
Sbjct: 305 ECYKCGKQGHWSRDC 319
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 590 STSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
S +R Q G P CY+CG+ GHW+++C
Sbjct: 225 SDTRGYQNAKTGTP--CYKCGKEGHWARDC 252
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+T KIF+G + TE +L+ F KYG VVE ++R
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Score = 38.3 bits (85), Expect = 0.005
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR------------ITVSCTWKTNKSAAN 299
KIFIG L TT F KYG + + I+R IT + +K +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 300 -HSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 476
H + ++V +G + T KIFVG + E+++ F K+G VVE
Sbjct: 80 THVINGKQVEIKRTIPKGAGGN-QSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 477 DIVRNY 494
++R++
Sbjct: 139 QVIRDH 144
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 336 GDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G ++R+ G KIF+G L T + F K+G + + I+R+
Sbjct: 2 GSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+T KIF+G + TE +L+ F KYG VVE ++R
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Score = 38.3 bits (85), Expect = 0.005
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR------------ITVSCTWKTNKSAAN 299
KIFIG L TT F KYG + + I+R IT + +K +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 300 -HSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 476
H + ++V +G + T KIFVG + E+++ F K+G VVE
Sbjct: 80 THVINGKQVEIKRTIPKGAGGN-QSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 477 DIVRNY 494
++R++
Sbjct: 139 QVIRDH 144
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 336 GDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G ++R+ G KIF+G L T + F K+G + + I+R+
Sbjct: 2 GSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN---------HSES 311
+++GN T +DL LF K+G V D+ ++ + A +
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 312 *RRVS-SWAGD-QNRSGQEPEGPST----PTTKIFVGNLTD-KTRAPEVRELFQKFGTVV 470
R++S WA D Q G+ +G + PT +FV N +TR ++ F+ +G V+
Sbjct: 64 RRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVL 123
Query: 471 ECDIVRNYGFV 503
+ RN+ FV
Sbjct: 124 NVRMRRNFAFV 134
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVH 506
++VGN TR ++ LF KFG V D+ Y FV+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVY 41
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECPKRWGPDR 703
G G ++C++C R GHW+++CP G DR
Sbjct: 110 GKGTEDECFKCRRPGHWARDCPST-GDDR 137
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
N G+ +IF+G LS TE L F++YG + EC I+
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLT 512
++ E ++IFVG L+ ++ F ++G + EC I+ R +GF+ T
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 513 RR 518
R
Sbjct: 62 DR 63
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECPKRWGPDR 703
G G ++C++C R GHW+++CP G DR
Sbjct: 110 GKGTEDECFKCRRPGHWARDCPST-GDDR 137
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
N G+ +IF+G LS TE L F++YG + EC I+
Sbjct: 6 NDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLT 512
++ E ++IFVG L+ ++ F ++G + EC I+ R +GF+ T
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 513 RR 518
R
Sbjct: 62 DR 63
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 38.3 bits (85), Expect = 0.005
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN---------HSES 311
+F GN E DL LF KYG V D+ + + A +
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 312 *RRV------SSWAGDQNRSGQEPEGPST--PTTKIFVGNL-TDKTRAPEVRELFQKFGT 464
RR+ S GD+ G S+ P+ +FV N D TR ++ + F+ +G
Sbjct: 64 GRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGK 123
Query: 465 VVECDIVRNYGFV 503
+V I RN+ F+
Sbjct: 124 IVNVRIRRNFAFI 136
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 509
+F GN R ++ LF+K+G V D+ + FV++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYM 42
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 38.3 bits (85), Expect = 0.005
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 629 PEQCYRCGRGGHWSKECP 682
P C++CGR GHWS++CP
Sbjct: 5 PTGCFKCGRPGHWSRDCP 22
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 37.9 bits (84), Expect = 0.006
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN---------HSES 311
+F GN E+DL LF KYG V D+ + + A + + +
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 312 *RRVS-SWA----GDQNRSGQEPEGPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 467
RR+ W G RSG S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 468 VECDIVRNYGFV 503
V I RN+ F+
Sbjct: 124 VNVRIRRNFAFI 135
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 509
+F GN R ++ LF+K+G V D+ + FV++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYM 42
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 37.9 bits (84), Expect = 0.006
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAAN---------HSES 311
+F GN E+DL LF KYG V D+ + + A + + +
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 312 *RRVS-SWA----GDQNRSGQEPEGPS--TPTTKIFVGNL-TDKTRAPEVRELFQKFGTV 467
RR+ W G RSG S P+ +FV N TR ++ F+ +G +
Sbjct: 64 GRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKI 123
Query: 468 VECDIVRNYGFV 503
V I RN+ F+
Sbjct: 124 VNVRIRRNFAFI 135
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 509
+F GN R ++ LF+K+G V D+ + FV++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYM 42
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.9 bits (84), Expect = 0.006
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKRWG 694
++C++CGR GHW+++CP G
Sbjct: 126 DECFKCGRVGHWARDCPSAGG 146
Score = 35.5 bits (78), Expect = 0.034
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+IF+G LS + T+ DL F ++G +++C I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLT-RRAM 524
++IFVG L+ + ++ F +FG +++C I+ R +GF+ RRAM
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--ITVSCTWKTNKSAANHSE 308
N + K+F+G + +E+ L LF+++ V E +I++ IT + + E
Sbjct: 12 NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREE 71
Query: 309 S*RRVSSWAGDQNRSGQEP-------EGPSTPTT-KIFVGNLTDKTRAPEVRELFQKFGT 464
+ + V++ + G +G K+FVG L EV+ LF K+GT
Sbjct: 72 ADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT 131
Query: 465 VVECDIVR 488
+ + I+R
Sbjct: 132 IKDLQILR 139
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 333 AGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
A ++NR E E + K+FVG + ++ LFQ+F V E +I+++
Sbjct: 4 AKEENREKNEEE----ESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--ITVSCTWKTNKSAANHSE 308
N + K+F+G + +E+ L LF+++ V E +I++ IT + + E
Sbjct: 12 NEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREE 71
Query: 309 S*RRVSSWAGDQNRSGQEP-------EGPSTPTT-KIFVGNLTDKTRAPEVRELFQKFGT 464
+ + V++ + G +G K+FVG L EV+ LF K+GT
Sbjct: 72 ADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT 131
Query: 465 VVECDIVR 488
+ + I+R
Sbjct: 132 IKDLQILR 139
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 333 AGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
A ++NR E E + K+FVG + ++ LFQ+F V E +I+++
Sbjct: 4 AKEENREKNEEE----ESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
G RT KIF+G L TEA+ + F+++GT+ +
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIAD 150
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E L+ F KYG +VE I+R
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMR 48
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 369 GPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
G T KIFVG L E + F +FGT+ D+V Y H T+R
Sbjct: 116 GGGARTKKIFVGGLPSSITEAEFKNYFDQFGTI--ADVVVMYD--HNTQR 161
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T ++E F K+G +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = +3
Query: 351 SGQEPEG--PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 506
SG P G PST ++VGN+ + P ++E+F G V C ++R +YGFVH
Sbjct: 41 SGNLPPGFDPST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVH 97
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVR-----QRPGMGDPEQCYRCGRGGHWSKECPK 685
D A + ++ +++G+ + V ++ R ++ D +CY CG GH S ECPK
Sbjct: 110 DAAKAARSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPK 169
Query: 686 -RWGP 697
+ GP
Sbjct: 170 NQLGP 174
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
RT KIF+G L TE+D + FE++GT +
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTD 136
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
P GP T KIFVG L + + F++FGT D+V Y H T+R
Sbjct: 101 PGGPGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTT--DVVVMYD--HNTQR 147
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E L+ F +G V+E I++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILK 39
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
RT KIF+G L TE+D + FE++GT +
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTD 136
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
P GP T KIFVG L + + F++FGT D+V Y H T+R
Sbjct: 101 PGGPGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTT--DVVVMYD--HNTQR 147
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E L+ F +G V+E I++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILK 39
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
KIF+G +S T E LR F KYG VV+ I+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
++KIFVG ++ T +RE F K+G VV+ I+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.034
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
T+ + + N++ +TT DL PLF KYG VV+ I R
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPR 49
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.034
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
T+ + + N++ +TT DL PLF KYG VV+ I R
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPR 49
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.034
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RITVSCTWKTNKSAANHSES- 311
++ N+ +T D+R LFEKYG+V++ ++ R V + + AA +S
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 312 ------*RRVS-SWAGDQNRSGQEP-EGPS-TPTTKIFVGNLTDKTRAPEVRELFQ-KFG 461
RR+ +A + + P E PS PT +FV NL + RA ++E F G
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTG 214
Query: 462 TVVECDIV 485
VV +++
Sbjct: 215 NVVSTEVI 222
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 35.5 bits (78), Expect = 0.034
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR---QRPGMGDPE---QCYRCGRGGHW 667
F D +DA L+G DG + V+ S R G P +C+ CG GHW
Sbjct: 10 FSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 668 SKEC 679
+++C
Sbjct: 70 ARDC 73
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 635 QCYRCGRGGHWSKECPKRWGPDR 703
+CYRCG GH + C P +
Sbjct: 81 KCYRCGERGHIERNCKNSPSPKK 103
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 354 GQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G G ++V NL D ++RELF +FGT+ C ++R+
Sbjct: 317 GSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 613
F A + + + E+NG MV G+P+ V L+ + +R
Sbjct: 375 FSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERR 410
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+++ NLS+ TT+ +L+ F +YG++ ++R
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMR 258
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+ P G +T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 8 RSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G T+ K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+ P G +T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 8 RSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G T+ K+F+G L+ +T ++R FE++G ++E I+
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 351 SGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
S P S P TK++V L+ +T +R+ F++FG ++ ++V
Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++G +T K+++ LS +TTE LR FE++G ++ ++V
Sbjct: 72 SSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
RT KIF+G LS TTE + + FE++G +
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTD 148
Score = 33.9 bits (74), Expect = 0.10
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS 266
+K+F+G ++ +T+E L+ F +YG V+E + + V+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVT 43
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 369 GPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G ++ T KIFVG L+ T E + F++FG + ++ +
Sbjct: 114 GVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHD 154
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.1 bits (77), Expect = 0.045
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS 266
K+FIG LS TTE L F K G VVE IV VS
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+K+F+G L+ T + E F K G VVE IV
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +3
Query: 399 VGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLTRR 518
V NL++ TR P++ ELF+ FG V C + R +GFV R
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSR 225
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
NA K+++ +S TE D+R +FEKYG V E
Sbjct: 104 NADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTE 138
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TKIFVG L +T+ +R F++FG +VE ++
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
KIF+G L+ +T +R FE++G +VE ++
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITV 263
++G ++ +++G+L+ +TTE+DL LF +YG DI RITV
Sbjct: 12 DSGFQSNNLWVGSLTPETTESDLTELFGRYG-----DIDRITV 49
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
+ ++VG+LT +T ++ ELF ++G + + + GF + R
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYR 61
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYRCGRGGHWSKEC 679
D +DA L+G DG + V+ S R G P +C+ CG GHW+++C
Sbjct: 15 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 73
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYRCGRGGHWSKEC 679
D +DA L+G DG + V+ S R G P +C+ CG GHW+++C
Sbjct: 26 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 84
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 34.7 bits (76), Expect = 0.060
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RITVSCTWKTNKSAANHSES*RRVSS 329
KIF+G L+ +TT A+ F KYG + + I+ R T + A+ S + +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 330 ---WAGDQNRSGQE-PEGPSTP----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
G Q + P G + T KIFVG + E +E F +FG + E I+
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 486 RNY 494
R++
Sbjct: 163 RDH 165
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 339 DQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
D ++S G KIFVG L +T + E + F K+G + + I+++
Sbjct: 26 DDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
++++GNLS TT+ LR F YG VV+ ++R
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMR 36
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 34.7 bits (76), Expect = 0.060
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKECP 682
+ +CYRCG GH+++ECP
Sbjct: 323 EASECYRCGEEGHFARECP 341
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 590 STSRVRQRPGMGDPEQCYRCGRGGHWSKECP 682
++S + G CYRC GH+++ECP
Sbjct: 342 NSSSISTSHGRESQTLCYRCNGSGHFARECP 372
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRW 691
CY C + GH +K+CP ++
Sbjct: 210 CYICKKTGHRAKDCPDKY 227
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++ FIG L+ T++ LR FEKYG +VE +V
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVV 39
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 599 RVRQRPGMG-DPEQCYRCGRGGHWSKECPKRWGPD 700
R R RP G C++CG+ GH+++ECP D
Sbjct: 106 RDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRD 140
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 381 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
P + F+G L T +R+ F+K+G +VE +V
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVV 39
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 354 GQEPEGPSTPTTKI-FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 494
G PE P + FV L T ++ +F +FGTVV D++R++
Sbjct: 231 GDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDF 278
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+F+ L+ T + DL +F ++GTVV D++R
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIR 276
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 34.7 bits (76), Expect = 0.060
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+ P G +T T K+FVG L +T E+R F +FG ++E I+
Sbjct: 8 RSPFGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E LR F YG VVE I+R
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMR 39
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
G RT KIF+G L TE + + F+++GT+ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
T KIFVG L E + F +FGT+ D+V Y H T+R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTI--ADVVVMYD--HNTQR 149
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E LR F YG VVE I+R
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMR 39
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
G RT KIF+G L TE + + F+++GT+ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
T KIFVG L E + F +FGT+ D+V Y H T+R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTI--ADVVVMYD--HNTQR 149
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+FIG +S T E LR F YG VVE I+R
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMR 39
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 141 GHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 239
G RT KIF+G L TE + + F+++GT+ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIAD 138
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
T KIFVG L E + F +FGT+ D+V Y H T+R
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTI--ADVVVMYD--HNTQR 149
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 34.3 bits (75), Expect = 0.079
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 611 RPGMGDPE-QCYRCGRGGHWSKECPKRWGPDR 703
R G G + +CY CG GH+++EC R G R
Sbjct: 91 RGGRGGSDLKCYECGETGHFARECRNRGGTGR 122
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +3
Query: 351 SGQEPEG--PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 506
SG P G PST ++VGN+ + P ++E+F G V ++R +YGFVH
Sbjct: 46 SGNLPPGFDPST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVH 102
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.3 bits (75), Expect = 0.079
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 357 QEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
++P G T ++V NL++ E+ ++F +FG C I+R+
Sbjct: 214 RDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD 258
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.10
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Frame = +3
Query: 150 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS----CTWKTN---KSAANHSE 308
T +++G+L TE L F ++ ++ + + S C N + AN +
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 309 S*RRVSSWAGDQNR---SGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 479
+ S G R S + P+ +FV NL + ++++F+KFG +V C
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 480 IV-------RNYGFV 503
+ R YGFV
Sbjct: 143 VATLEDGKSRGYGFV 157
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+F+G L+ +T + LR FE++G +VE ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.9 bits (74), Expect = 0.10
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----RITVSC---TWKTNKSAANHSES 311
K+F+G + TE L LF ++ V E +I+ R C T T + A S
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 312 *RRVSSWAGDQNR-SGQEPEGPSTPTT-KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+ G + + +G K+FVG L EV+ LF ++GT+ + I+
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL 132
Query: 486 R 488
R
Sbjct: 133 R 133
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 613
+D+ +AI +NG + G+ +KVQL +Q+
Sbjct: 378 YDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQ 413
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKEC 679
G G+ CY+CG+ GH+++EC
Sbjct: 275 GGGNDNACYKCGKEGHFAREC 295
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 611 RPGMGDPEQCYRCGRGGHWSKECPKRWGPDR 703
R G G CY CG GH +++C + P R
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSR 253
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 679
F T + K +N G +K + ++ R G G CY CG GH SK+C
Sbjct: 59 FAITQGSDGKTKAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDC 115
Score = 28.7 bits (61), Expect = 3.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
CY+CG GH +++C +R
Sbjct: 255 CYQCGGSGHLARDCDQR 271
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 632 EQCYRCGRGGHWSKECPKRWGPDR 703
E CY CG GH++++C D+
Sbjct: 132 EGCYNCGDTGHFARDCTSAGNGDQ 155
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPKR 688
G + CY CG GH++++C ++
Sbjct: 195 GGNDGCYTCGDVGHFARDCTQK 216
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 333 AGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 506
A QN G E T TT IFVG + +++ +F +FG +V I + GFV
Sbjct: 261 ASYQNTQGNSGESDPTNTT-IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQ 319
Query: 507 LTRRA 521
RA
Sbjct: 320 YANRA 324
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
IF+G + TE DL+ +F ++G +V I
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
>At3g48750.1 68416.m05324 cell division control protein 2 homolog A
(CDC2A) identical to cell division control protein 2
homolog A [Arabidopsis thaliana] SWISS-PROT:P24100
Length = 294
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 512 RQMHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITHEYFSGWRRRPFRLLAA 351
R +H + ++ +D R LK LADFG AR VR THE + W R P LL +
Sbjct: 122 RVLHRDLKPQNLLIDRRTNSLK-LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS 178
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPKRWG 694
G +CY CG GH+++EC R G
Sbjct: 93 GSDLKCYECGESGHFARECRSRGG 116
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.14
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-ITVSCTWKTNKSAANHSES*RR 320
H +++G+L E+ L LF + V + R +T + AN ++ R
Sbjct: 42 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 101
Query: 321 VSS--WAGDQNR------SGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVEC 476
+ S +A ++R S ++P + +F+ NL + E F FGT++ C
Sbjct: 102 MESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 161
Query: 477 ----DIV---RNYGFVHLTR 515
D+V + YGFV +
Sbjct: 162 KVAMDVVGRSKGYGFVQFEK 181
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
I+VGNL R EV +LF K+G +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
I++GNL + ++ LF KYG +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.5 bits (73), Expect = 0.14
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----RITVSCTWKT------------- 281
K+F+G + TE L LF ++ V E +I+ R C + T
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 282 --NKSAANHSES*RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQK 455
NK + S +V G+ R + P K+FVG L EV+ LF +
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELERL-DVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 456 FGTVVECDIVR 488
+GT+ + I+R
Sbjct: 132 YGTIKDLQILR 142
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 613
+D+ +AI +NG + G+ +KVQL +Q+
Sbjct: 387 YDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQ 422
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G TF K+F+G L+ +T LR FE+YG ++E ++
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 494
KIFVGNL + PE E F++FG + +++ +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGH 200
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 135 NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+A ++T KIF+G L T+ + R FE YG V + I+
Sbjct: 104 DAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIM 142
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
K+F+G +S +T E LR F YG V + ++R
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMR 39
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVS 266
+F+G LS TTE LR + KYG + +VR V+
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVT 101
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 333 AGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
AG + SG + + P +FVG L+ T +RE+ K+G + +VR+
Sbjct: 47 AGLYDPSG-DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 32.7 bits (71), Expect = 0.24
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPKRWG 694
G E+C+ CG+ GH++ +CP + G
Sbjct: 260 GQQEKCFVCGQTGHFASDCPGKSG 283
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 357 QEPEGPST-PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
Q P P P+T +FV L+ +T + +R F +FG V + +V
Sbjct: 45 QTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 590 STSRVRQRPGMGDPEQCYRCGRGGHWSKECPKR 688
S SR R + G+ C+ CG GH+ +CP R
Sbjct: 146 SVSRDRSK-SKGEKGACWICGEDGHYKNDCPSR 177
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+R + E P T K+F+ L+ T +R F+ FG +VE I+
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKII 314
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 32.3 bits (70), Expect = 0.32
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKEC 679
DP CY+CG+ GH+++ C
Sbjct: 32 DPRACYKCGKLGHFARSC 49
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 351 SGQEPEGPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 506
SG P G PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 50 SGNLPPG-FDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +3
Query: 351 SGQEPEGPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 506
SG P G PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 50 SGNLPPG-FDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
N S Q GPS + KIFVG L E ++ F +FG + D+V Y H T+R
Sbjct: 20 NSSLQGSPGPSN-SKKIFVGGLASSVTEAEFKKYFAQFGMIT--DVVVMYD--HRTQR 72
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVE 239
KIF+G L+ TEA+ + F ++G + +
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITD 61
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
N S Q GPS + KIFVG L E ++ F +FG + D+V Y H T+R
Sbjct: 93 NSSLQGSPGPSN-SKKIFVGGLASSVTEAEFKKYFAQFGMIT--DVVVMYD--HRTQR 145
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVE 239
KIF+G L+ TEA+ + F ++G + +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 345 NRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRR 518
N S Q GPS + KIFVG L E ++ F +FG + D+V Y H T+R
Sbjct: 93 NSSLQGSPGPSN-SKKIFVGGLASSVTEAEFKKYFAQFGMIT--DVVVMYD--HRTQR 145
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVE 239
KIF+G L+ TEA+ + F ++G + +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITD 134
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
IF+ L TT +L+ FE YG + EC +V
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVV 195
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 611 RPGMGDPEQCYRCGRGGHWSKECPKRWG 694
R G G C++CG GH ++EC + G
Sbjct: 129 RGGGGGDNSCFKCGEPGHMARECSQGGG 156
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKEC 679
G G CY CG GH++++C
Sbjct: 175 GGGGGLSCYSCGESGHFARDC 195
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 138 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
A RT KIF+G L T + R FE YG V + I+
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIM 142
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 488
K+F+G ++ T +RE F FG V++ ++R
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +2
Query: 506 FDATGDVNDAIKEL---NGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKE 676
FD D DAI L NG V+ +R G+ D +CY CG GH+++E
Sbjct: 45 FDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRRGGIED-SKCYECGELGHFARE 103
Query: 677 CPKRWGPDR 703
C + G R
Sbjct: 104 CRRGRGSVR 112
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +2
Query: 506 FDATGDVNDAIKEL---NGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKE 676
FD D DAI L NG V+ +R G+ D +CY CG GH+++E
Sbjct: 45 FDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRRGGIED-SKCYECGELGHFARE 103
Query: 677 CPKRWGPDR 703
C + G R
Sbjct: 104 CRRGRGSVR 112
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G TF K+F+G L+ +T LR F++YG ++E ++
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 590 STSRVRQRPGMGDPEQCYRCGRGGHWSKECPKRWG 694
S+SR R G C+ CG+ GH + +CP + G
Sbjct: 714 SSSRAPSRESFGG--SCFICGKSGHRATDCPDKRG 746
>At5g03900.2 68418.m00368 expressed protein predicted protein,
Synechocystis sp., PIR:S74969
Length = 523
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 145 TVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSELRFRAHGKRTSRPRTIQNLNGEL 324
T + SS FLI+ + P+ DRYS + + +S+ +F HG + ++ ++G +
Sbjct: 15 TQVGLSSKKPFLIRLRSPV-DRYSFPRMLTERCLSTRRKFNRHGIAVVKAASLDKVSGAI 73
Query: 325 VHGQAIK 345
G ++
Sbjct: 74 KPGGLVE 80
>At5g03900.1 68418.m00367 expressed protein predicted protein,
Synechocystis sp., PIR:S74969
Length = 429
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 145 TVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSELRFRAHGKRTSRPRTIQNLNGEL 324
T + SS FLI+ + P+ DRYS + + +S+ +F HG + ++ ++G +
Sbjct: 15 TQVGLSSKKPFLIRLRSPV-DRYSFPRMLTERCLSTRRKFNRHGIAVVKAASLDKVSGAI 73
Query: 325 VHGQAIK 345
G ++
Sbjct: 74 KPGGLVE 80
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 123 PII*NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
P+ N+ K+F+GNLS A L LFE G V +++
Sbjct: 89 PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVI 131
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLTRRA 521
+P K+FVGNL+ + ++ +LF+ G V +++ R +GFV ++ A
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 123 PII*NAGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
P+ N+ K+F+GNLS A L LFE G V +++
Sbjct: 89 PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVI 131
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLTRRA 521
+P K+FVGNL+ + ++ +LF+ G V +++ R +GFV ++ A
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 482
I+VGNL R E+ ++F K+G +V+ ++
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 138 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
+G + I++GNL E ++ +F KYG +V+ ++
Sbjct: 2 SGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+++G + TE DL +F +YG +V+ +++R
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIR 69
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 354 GQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLTRR 518
G + +G ST T IFVG + ++R+ F +FG VV I + GFV R
Sbjct: 311 GSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = +3
Query: 315 RRVS-SWAGD-QNRSGQEPEGPST----PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVE 473
R++S WA D Q G+ +G + PT +FV N +TR ++ F+ +G V+
Sbjct: 39 RKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLN 98
Query: 474 CDIVRNYGFV 503
+ RN+ FV
Sbjct: 99 VRMRRNFAFV 108
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSCTWKTNKSAA 296
+ F+IF+G+L +E DL+ +F G V E VRI + K +K +A
Sbjct: 212 KEFEIFVGSLDKGASEEDLKKVFGHVGEVTE---VRILKNPQTKKSKGSA 258
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
IF+ TT+ +L+ FE YG + EC +V
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVV 440
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLTRR 518
PEG TT IFVG L ++++ F +FG +V I + GFV R
Sbjct: 297 PEGDIMNTT-IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNR 349
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
IF+G L T+ DL+ F ++G +V I
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
++V NL D ++ ELF +FGT+ C ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G T+ K+F+G L+ +T + ++ FE++G ++E ++
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G T+ K+F+G L+ +T + ++ FE++G ++E ++
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 GHRTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
G T+ K+F+G L+ +T + ++ FE++G ++E ++
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+FIG ++ E LR F KYG VV+ ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLT 512
++K+F+G + +RE F K+G VV+ ++ R +GFV T
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFT 89
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.7 bits (66), Expect = 0.98
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 638 CYRCGRGGHWSKEC 679
CYRCG HW+K C
Sbjct: 278 CYRCGMDDHWAKTC 291
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 30.7 bits (66), Expect = 0.98
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
C+RC + GHW +CP
Sbjct: 11 CFRCRQAGHWINDCP 25
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 30.7 bits (66), Expect = 0.98
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 611 RPGMGDPEQCYRCGRGGHWSKEC 679
R G G CY CG GH++++C
Sbjct: 176 RGGGGGGGSCYSCGESGHFARDC 198
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWG 694
CY+CG GH +++C + G
Sbjct: 131 CYKCGEPGHMARDCSEGGG 149
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +3
Query: 399 VGNLTDKTRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLTRR 518
V NL++ TR P++ ELF FG V + + R +GFV+ R
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSR 264
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
F ++GNL T E DL+ F ++G V+ ++
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNV 39
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 381 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 473
P T IFV NL P++ ELF+ FG + E
Sbjct: 278 PGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 381 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 473
P T IFV NL P++ ELF+ FG + E
Sbjct: 278 PGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 393 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
+FV NL +T+ P + + F+K G VV ++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN 161
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 563 DGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECP 682
DG +S+S+V++R CY CG GH S CP
Sbjct: 379 DGNYFATTVSSSKVKRRV-------CYECGEKGHLSTACP 411
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
CY CG GH S CP +
Sbjct: 576 CYECGEKGHLSSACPNK 592
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLF 215
+++IGNL+ TTE D+R LF
Sbjct: 263 RVYIGNLAWDTTERDIRKLF 282
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
CY CG GH S CP
Sbjct: 481 CYECGEKGHLSTACP 495
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 336 GDQNRSGQEPEGPSTPTT----KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
GD+ E E +T + +++VGNL + E+ ++F + GTVV+ IV
Sbjct: 95 GDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++++GNL T ++L +F + GTVV+ IV
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDP 631
F++ +V A+ +NG+ V+G+ +++ L++ R++P + P
Sbjct: 267 FESAENVQSALATMNGVEVEGRALRLNLASE--REKPTVSPP 306
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 165 IGNLSDKTTEADLRPLFEKYGTVVECDI 248
+ NLS T LR LF GTVV+C I
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSI 382
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 399 VGNLTDKTRAPEVRELFQKFGTVVECDI 482
V NL+ ++R+LF GTVV+C I
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSI 382
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
KIF+ L +TT L +FE YG + EC +V
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
KIF+ L +TT L +FE YG + EC +V
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 584 QLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKR 688
++ TS++ G G CY CG GH +++C +R
Sbjct: 237 KVCTSKIPSGGG-GGGRACYECGGTGHLARDCDRR 270
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKEC 679
G G +C+ CG+ GH+++EC
Sbjct: 277 GGGGSNKCFICGKEGHFAREC 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 617 GMGDPEQCYRCGRGGHWSKECPKRWGPDR 703
G G CY CG GH +K+C G +R
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNR 184
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKECPKRWG 694
G +CY CG GH++++C + G
Sbjct: 127 GGEGECYMCGDVGHFARDCRQSGG 150
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 605 RQRPGMGDPEQCYRCGRGGHWSKEC 679
++ G C+ CG GH +K+C
Sbjct: 85 KENSSRGSGGNCFNCGEVGHMAKDC 109
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTV 233
++++GNL +E DLR +FE +G+V
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = +3
Query: 369 GP-STPTTKIFVGNLTDKTRAPEVRELFQKFGTVV-------ECDIVRNYGFVHLTR 515
GP S +++VGNL ++R++F+ FG+V E + + +GFV R
Sbjct: 278 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFAR 334
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 30.3 bits (65), Expect = 1.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 638 CYRCGRGGHWSKECP 682
C+ C + GHW+K CP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +3
Query: 336 GDQNRSGQEPEGPSTPT------TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RN 491
G Q + G P G T + T IFVG L ++++ F +FG +V I +
Sbjct: 283 GYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKG 342
Query: 492 YGFVHLTRR 518
GFV R
Sbjct: 343 CGFVQFVNR 351
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 248
IF+G L T+ DL+ F ++G +V I
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 30.3 bits (65), Expect = 1.3
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTVVE---C-DIVRITVSCTWKTNKSAANHSES 311
H ++ G+L K TEA L LF+ VV C D R ++ + N S N +
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAY-INFSNPNDAYR 104
Query: 312 *RRVSSWAGDQNR------SGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 473
++ +R S ++P + IF+ NL + E F FGT++
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILS 164
Query: 474 CDIV-------RNYGFVHLTR 515
C + + YGFV +
Sbjct: 165 CKVAMDVTGRSKGYGFVQFEK 185
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
TP+ KIFVG L+ T ++E F FG +V+ +V
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVV 68
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K++VGNL T+ +R F KFGT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 351 SGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
S EP P +++V N+ ++ ++FQ FGTV+ ++ RN
Sbjct: 97 SKAEPVKKPRPC-ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRN 142
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+++GNL T LR F K+GT+V ++
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVL 244
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 336 GDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFV 503
G N G+ G P+ + VGN++ E++ LF++FG + +N GF+
Sbjct: 201 GGNNSVGELNRG-EIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQL 589
+ GD A+K+ N + +DG+PMK+++
Sbjct: 133 YSRRGDALAAVKKYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQL 589
+ GD A+K+ N + +DG+PMK+++
Sbjct: 69 YSRRGDALAAVKKYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQL 589
+ GD A+K+ N + +DG+PMK+++
Sbjct: 135 YSRRGDALAAVKKYNDVQLDGKPMKIEI 162
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
T TKI+VG L TR + F++FG ++ ++V
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVV 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 524 VNDAIKELNGMMVDGQPMKVQLSTSRVR--QRPGMGDPEQCYRCGRGGHWS 670
+ DAI+E+NG +DG+ + V + SR G G YR G GG +S
Sbjct: 60 MRDAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 524 VNDAIKELNGMMVDGQPMKVQLSTSRVR--QRPGMGDPEQCYRCGRGGHWS 670
+ DAI+E+NG +DG+ + V + SR G G YR G GG +S
Sbjct: 60 MRDAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 1.7
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR------------ITVSCT--WKTNKSA 293
K+F+GNL+ L LFE+ GTV +++ +T+S +T
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 294 ANHSES*RRVSSWAGDQNRSGQEPEGPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTV 467
N + R+ + R + P P +++VGNL + +LF + G V
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 468 VECDIV 485
VE +V
Sbjct: 271 VEARVV 276
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
F++++GNL L LF ++G VVE +V
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVV 276
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
K+FVGNL + + LF++ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+TK+F+G L+ T +R+ F FG VV+ ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
+TK+F+G L+ T +R+ F FG VV+ ++
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGM 622
FD+ D A+K L+G +VDG+ + V+++ + R G+
Sbjct: 55 FDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
+ ++FV L+ T +R+LF FG + E ++R+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRD 41
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 375 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 497
++P++K+F+G L+ +++ F FG V E I + G
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKG 77
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRITVSC 269
+F+ +S +TE L F +YG V++ D++ + C
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRC 59
>At1g76540.1 68414.m08907 cell division control protein, putative
similar to SWISS-PROT:Q38775, cell division control
protein 2 homolog D [Antirrhinum majus]; contains
protein kinase domain, Pfam:PF00069
Length = 313
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 506 MHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITHEYFSGWRRRPFRLLAAS 348
+H + H++ +D + LK +AD G AR ++ THE + W R P LL A+
Sbjct: 142 LHRDLKPHNLLMDPKTMRLK-IADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGAT 197
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKECPK 685
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKECPK 685
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At1g20930.1 68414.m02621 cell division control protein, putative
cdc2MsF [Medicago sativa] gi|1806146|emb|CAA65982
Length = 315
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 506 MHEAVVTHDIALDDRPELLKQLADFGRARL----VR*ITHEYFSGWRRRPFRLLAAS 348
+H + H++ +D + LK +AD G AR ++ THE + W R P LL A+
Sbjct: 144 LHRDLKPHNLLMDRKTMTLK-IADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGAT 199
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +3
Query: 342 QNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVHLTR 515
QN G T IFVG L E++ +F +FG ++ I + GFV
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYAN 304
Query: 516 RA 521
+A
Sbjct: 305 KA 306
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 539 KELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKR 688
K+ G D +P + ST + PGM E C+ C H +K CP++
Sbjct: 44 KKKPGSSTD-RPQRTGSSTRHPLRVPGMKPGEGCFICHSKTHIAKLCPEK 92
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 626 DPEQCYRCGRGGHWSKECPK 685
DP +C+ CG H +ECP+
Sbjct: 239 DPPRCFNCGGYSHSLRECPR 258
>At5g21080.1 68418.m02510 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 980
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 285 KSAANHSES*RR-VSSWAGDQNRSGQEPEGPS 377
KS+ + S+S +R SS DQN SG PE PS
Sbjct: 577 KSSYSRSQSVKRNPSSMVADQNSSGSSPEKPS 608
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +3
Query: 339 DQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNY 494
D+ + +EP P T K+FVGNL+ + + F++ G VV +V R Y
Sbjct: 162 DKPKPNKEPLYPETEH-KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGY 220
Query: 495 GFVHLTRRA 521
GFV + +A
Sbjct: 221 GFVCYSSKA 229
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 614 PGMGDPEQCYRCGRGGHWSKECP 682
P M D +CY CG GH S CP
Sbjct: 357 PYMVDCAKCYSCGGVGHVSMYCP 379
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +3
Query: 327 SWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV------- 485
SWA ++RSG E + ++ +++ NL ++ LF+ G +++ I
Sbjct: 16 SWA--ESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKE 73
Query: 486 -RNYGFVHLTRR 518
YGFVH R
Sbjct: 74 DSRYGFVHYAER 85
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 159 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+++ NL++ TT+ DL+ F +YG + +++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 378 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLTRRA 521
T TK+FVG L T + + F K+G ++E I+ + LTRR+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISD----KLTRRS 57
>At3g13460.2 68416.m01694 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 664
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 653 GHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRS 546
G GST R ++G+DS T WA YRS
Sbjct: 322 GQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRS 357
>At3g13460.1 68416.m01693 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 667
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 653 GHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPSYRS 546
G GST R ++G+DS T WA YRS
Sbjct: 325 GQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRS 360
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 605 RQRPGMGDPEQCYRCGRGGHWSKECPKRWGPDR 703
R R G+ C+ CG GH + ECP DR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSARVADR 252
>At5g48240.1 68418.m05960 hypothetical protein
Length = 339
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 641 STARGRPCPAAAGHDSSTTAPSWAVRRPSY 552
S +G P A A H S AP WA R +Y
Sbjct: 277 SIEKGSPSVARAAHKSEDEAPVWAPLRDNY 306
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTV 233
K+++GNL +E LR +FE +G V
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPV 291
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+FI L+ TT LR LF YG + E ++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVI 107
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 506 FDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 613
+D++ +V +AIK L+G +DG+ ++V + +R +R
Sbjct: 252 YDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
K+F+GNL A L LFE G V +++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 123
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
++++GNLS + L LF + G VVE ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVI 236
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKR 688
CYRC + GH +K CP R
Sbjct: 227 CYRCKQEGHIAKICPTR 243
>At2g01930.2 68415.m00128 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At2g01930.1 68415.m00127 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At1g73690.1 68414.m08533 cell division protein kinase, putative
similar to cell division protein kinase 7 [Homo sapiens]
SWISS-PROT:P50613
Length = 398
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 446 QLADFGRARLV----R*ITHEYFSGWRRRPFRLLAA 351
+LADFG AR+ R TH+ F+ W R P L A
Sbjct: 148 KLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGA 183
>At1g18040.1 68414.m02231 cell division protein kinase, putative
similar to cell division protein kinase 7 [Homo sapiens]
SWISS-PROT:P50613
Length = 391
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 446 QLADFGRARLV----R*ITHEYFSGWRRRPFRLLAA 351
+LADFG AR+ R TH+ F+ W R P L A
Sbjct: 149 KLADFGLARIFGSPNRKFTHQVFARWYRAPELLFGA 184
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 153 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
F+I++GNL L LF ++G VV+ +V
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVV 239
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 363 PEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
PE P K+FVGNL + + LF++ GTV +++ N
Sbjct: 107 PEPPEE--AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYN 147
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 635 QCYRCGRGGHWSKEC 679
QC +C + GHW+ EC
Sbjct: 99 QCQKCFQAGHWTYEC 113
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 315 RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
R +S AGD +E + + +FV +D ++++F +FG V I+ N
Sbjct: 36 RTISCVAGDDET--REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 92
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 315 RRVSSWAGDQNRSGQEPEGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
R +S AGD +E + + +FV +D ++++F +FG V I+ N
Sbjct: 55 RTISCVAGDDET--REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 111
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 DQNRSGQEPEG---PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 494
D NR + P S+ + + + NL R ++R+ F++FG + + + RNY
Sbjct: 28 DDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVE 239
+IF+ + +E+D R FE+YG + +
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITD 119
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 369 GPSTPTT-----KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
G PTT KIFVG L + ++R+ F +FG + + I ++
Sbjct: 229 GRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
>At1g14685.3 68414.m01750 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.2 68414.m01749 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.1 68414.m01748 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 521 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGM 622
D N +++LNG V+G+ +KV ++ + P +
Sbjct: 129 DANAVVEKLNGNTVEGREIKVNITEKPIASSPDL 162
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 82 FNLCYILLFFVHSNP*SKM 138
F LCYI+LF +H++ +KM
Sbjct: 88 FQLCYIILFIMHTDKKNKM 106
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G E+C+ CG+ GH++ C
Sbjct: 259 GQQERCFLCGQMGHFASNC 277
>At1g68120.1 68414.m07781 expressed protein
Length = 270
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 623 GDPEQCYRCGRGGHWSKEC 679
G P+QCYR G GG W C
Sbjct: 186 GMPQQCYRWGCGG-WQSAC 203
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+T KIF+G L E +L+ F YG ++E I+
Sbjct: 155 KTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIM 189
>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 513
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 692 PSASGTPWTSGPRGHSGSTARGRP 621
P G P+ +GPRG SG G P
Sbjct: 456 PQGRGAPYGAGPRGPSGGYGVGPP 479
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 556 DGRRTAHEGAVVDESCPAAAGHGRPRAVLPLWPRGPLVQGVPEALGP 696
+G E S A AG G RA P GPLVQ P GP
Sbjct: 86 EGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQPGLSGP 132
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 366 EGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
EGP +IFVG L +VREL + FG + D+V++
Sbjct: 356 EGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+IF+G L TE+ +R L E +G + D+V+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVK 392
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 366 EGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
EGP +IFVG L +VREL + FG + D+V++
Sbjct: 356 EGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+IF+G L TE+ +R L E +G + D+V+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVK 392
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 366 EGPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 491
EGP +IFVG L +VREL + FG + D+V++
Sbjct: 356 EGPD----RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 156 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 254
+IF+G L TE+ +R L E +G + D+V+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVK 392
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 574 GLSVDHHTV-QLFDSVVHIARRVKCTKP*LRTISHSTTVP 458
G+S +H+ + + FDS+ A R KC L + H +P
Sbjct: 324 GISSEHYAILEKFDSLTGDAHRDKCLGKLLEAVQHICYIP 363
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 262 FRAHGKRTSRPRTIQNLNGELVHGQAIKIEAAKSRKGRRRQPLKYSW 402
F + +R+S + +++ V+GQ +++ AK + R+ P YS+
Sbjct: 335 FVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSY 381
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 638 CYRCGRGGHWSKECPKRWGPDR 703
C CG GH+++ CP G +R
Sbjct: 94 CKICGESGHFTQGCPSTLGANR 115
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
++K+FVG L+ T +++ F FG V E ++
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 384 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 485
++K+FVG L+ T +++ F FG V E ++
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 147 RTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
R +++ NLS+ E LR +F YG +V ++
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVM 336
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 390 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR-----NYGFVHLT 512
K+FV NL ++ ELF + GTV +I+R N GF +T
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVT 141
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 138 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+G ++ F+G L+ T + L F +YG V++ I+
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKII 40
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 138 AGHRTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 251
+G ++ F+G L+ T + L F +YG V++ I+
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKII 40
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 387 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 494
T + V NL R ++R+ F++FG V + + R+Y
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDY 71
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTV 233
H + +F+ N++ +++L LFE+YG +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDI 194
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 144 HRTFKIFIGNLSDKTTEADLRPLFEKYGTV 233
H + +F+ N++ +++L LFE+YG +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDI 194
>At1g22480.1 68414.m02809 plastocyanin-like domain-containing
protein
Length = 174
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 695 GPSASGTPWTSGPRGHSGSTARGRPCPA-AAGHDSSTTAPSWAV 567
G + + TP+T G G++ +T + PC A A +WAV
Sbjct: 123 GGTTTPTPFTGGGGGYNPTTTQAIPCAAWAVSCPLRALVATWAV 166
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 475 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 371
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,229
Number of Sequences: 28952
Number of extensions: 325032
Number of successful extensions: 1566
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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