Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021688
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    77   2e-15
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.9  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    25   7.7  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 31/88 (35%), Positives = 56/88 (63%)
 Frame = +3

Query: 243 VFGYDETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYT 422
           +   D+ +++L +NA +   A E+ T   E+G+ D+FE + +V+E+V  G WV + FIYT
Sbjct: 478 ILACDDDFYLLGFNAEMFYSAVESGTADEEEGVADSFEALADVSESVVNGKWVAETFIYT 537

Query: 423 NTLNRINYYVGGEIVTVAHLDHTMYILG 506
            T  R+NY +G +   +A+++ + Y+LG
Sbjct: 538 TTAARLNYLIGDQTYKIANVESSFYLLG 565



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +1

Query: 1   DSSEYATLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLE 180
           DS+ Y +  +  S+ + KNFKE       Y  + IFGG++LGV  +      FYDW+   
Sbjct: 399 DSNVYGSRTSDRSIVIHKNFKESNRLDLSYSCDKIFGGFLLGV--VGSDFICFYDWDTGI 456

Query: 181 LVRRIEIQPRHVFWSESGNLVCLA 252
           LVR+I+++P+ V+W++ G  V LA
Sbjct: 457 LVRKIDVKPKGVYWNDDGRFVILA 480



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 503 GIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTEHR 664
           G + +++R+YL D+++N+          EYQ+ V++GD E A  +L  I    R
Sbjct: 565 GYIPRDDRIYLTDRDMNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDR 618


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 168  PIVERECYSADRLHAEHVASEYTFSTVLGLEA 73
            PI ER+    D+ HA  V +E  F+T+  +EA
Sbjct: 964  PIYERDHLLNDKQHAWFVWTEVAFATIFTIEA 995


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +3

Query: 162 RLGTFGTCQTY*D----SASSRVLVRKREPCVFGYDETYFILK-YNAAVVTR--ARETNT 320
           R+G FG CQ Y      S+ S +L    +  +F   E   ++K Y+  ++     RE + 
Sbjct: 33  RVGVFGGCQHYTGAPYYSSMSSMLFGSDQSHIFCEKEAANVIKSYSPDLIVHPFLREKDK 92

Query: 321 DITEDGIEDAFEVV 362
              ED ++  FE++
Sbjct: 93  AGPEDSVDKCFELI 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,729
Number of Sequences: 5004
Number of extensions: 59265
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)