Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021688
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 111 4e-25
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 92 3e-19
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 92 3e-19
10_08_0083 - 14715517-14715595,14716022-14716150,14716280-147164... 31 1.1
08_01_0953 - 9471342-9471420,9471848-9471976,9472106-9472313,947... 30 1.5
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 29 3.4
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 6.0
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677... 28 6.0
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 6.0
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 28 7.9
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191... 28 7.9
01_06_1372 + 36726129-36728240 28 7.9
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 111 bits (268), Expect = 4e-25
Identities = 49/90 (54%), Positives = 66/90 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN VV E+ + E+G+EDAFE++ EVNE V+TGIWVGDCFIY N+
Sbjct: 478 DTSFYILKYNRDVVASYLESGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNSSW 537
Query: 435 RINYYVGGEIVTVAHLDHTMYILG*LLRRT 524
R+NY VGGE+ T+ HLD MY+LG L ++
Sbjct: 538 RLNYCVGGEVTTMYHLDRPMYLLGYLANQS 567
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/83 (40%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
EYA E++S +K+F K+F+E+K+ +P + AE IFGG +L + S + F YDW L+
Sbjct: 397 EYAIRESTSRIKIFSKSFQEKKTIRPTFSAERIFGGILLAMCSSDFICF--YDWADCRLI 454
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
RRI++ ++++W++SG+LV +A+
Sbjct: 455 RRIDVNVKNLYWADSGDLVAIAS 477
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIP 652
RP Y+ G +A ++R+YL DKE N+ EY+T VMRGD E A+ +LP+IP
Sbjct: 555 RPMYL-LGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDIERANDILPSIP 610
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 92.3 bits (219), Expect = 3e-19
Identities = 36/73 (49%), Positives = 55/73 (75%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN VV+ + + E+G+EDAFE++ E+NE ++TG+WVGDCFIY N+ +
Sbjct: 496 DTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGLWVGDCFIYNNSSS 555
Query: 435 RINYYVGGEIVTV 473
R+NY VGGE + +
Sbjct: 556 RLNYCVGGEAIAI 568
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/83 (39%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
EYA E++S +K++ KNF+ERKS +P + AE IFGG +L + + + F +DW ++
Sbjct: 415 EYAVRESTSRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICF--HDWAEGRMI 472
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
RRI++ ++++W++SG+LV +A+
Sbjct: 473 RRIDVNVKNLYWADSGDLVTIAS 495
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 92.3 bits (219), Expect = 3e-19
Identities = 36/73 (49%), Positives = 55/73 (75%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN VV+ + + E+G+EDAFE++ E+NE ++TG+WVGDCFIY N+ +
Sbjct: 491 DTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGLWVGDCFIYNNSSS 550
Query: 435 RINYYVGGEIVTV 473
R+NY VGGE + +
Sbjct: 551 RLNYCVGGEAIAI 563
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/83 (39%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
EYA E++S +K++ KNF+ERKS +P + AE IFGG +L + + + F +DW ++
Sbjct: 410 EYAVRESTSRIKIYSKNFQERKSIRPPFSAERIFGGVLLAMCTNDFICF--HDWAEGRMI 467
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
RRI++ ++++W++SG+LV +A+
Sbjct: 468 RRIDVNVKNLYWADSGDLVTIAS 490
>10_08_0083 -
14715517-14715595,14716022-14716150,14716280-14716487,
14716789-14716852,14717727-14717768,14718175-14718279,
14718601-14718695,14718789-14718882
Length = 271
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -3
Query: 350 RIFNSIL--SNVGISLPCSG-HNGSVVLQDEVCFIVAKHTRFPLSDQNT*RG*ISIRLTS 180
R + +IL SN IS CSG HNG L + V V ++FP+ + N+ G I LTS
Sbjct: 138 RSYGNILCESNTSIS-GCSGCHNGDKELLNAVLLDVKSGSQFPVLESNSVHG-NEISLTS 195
Query: 179 SKCSQS*NENATPLI 135
S+ N TP++
Sbjct: 196 E--SEVSNLRYTPMV 208
>08_01_0953 -
9471342-9471420,9471848-9471976,9472106-9472313,
9472619-9472682,9473557-9473598,9474016-9474120,
9474442-9474536,9474630-9474723
Length = 271
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -3
Query: 350 RIFNSIL--SNVGISLPCSG-HNGSVVLQDEVCFIVAKHTRFPLSDQNT*RG*ISIRLTS 180
R + +IL SN IS CSG HNG L + V V ++FP+ + N+ G I LTS
Sbjct: 138 RSYGNILCESNTSIS-GCSGCHNGDKELLNVVLLDVKSGSQFPVLESNSVHG-NEISLTS 195
Query: 179 SKCSQS*NENATPLI 135
S+ N TP++
Sbjct: 196 E--SEVSNLRYTPMV 208
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 19 TLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELVRRIE 198
++ N + V++FK + F+P + GGY L V S + V S D E +RR E
Sbjct: 721 SINNGNIVRIFKGGSSQLRFQPRH------GGY-LAVASENAV--SILDVETQACLRRFE 771
Query: 199 IQPRH---VFWSESGNLV 243
+H V W SG V
Sbjct: 772 GHTKHVDSVCWDPSGEYV 789
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 399 VGDCFIYTNTLNRINYYVGGEIVTVA 476
+ DC+I++N +NYY G+I A
Sbjct: 691 ISDCYIHSNPAMYVNYYSFGQIAASA 716
>04_04_1258 +
32165918-32166041,32167218-32167384,32167569-32167769,
32168472-32168631,32168729-32168942,32169160-32169307
Length = 337
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -2
Query: 219 KHVTRLNLNTSDKFQMFPIVERECYSADRLHAEHVASEYT 100
KH R N+ T D FQ FP R CYS+++L E ++T
Sbjct: 279 KH-PRYNVKT-DGFQGFPEKPRVCYSSEKLVREGFEFKWT 316
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 308 PCSGHNGSVVLQDEVCFIVAKHTRFPLSDQN 216
P G VVL DE+C + K + SD+N
Sbjct: 73 PSEAGAGGVVLTDELCDRIVKQVEYYFSDEN 103
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 344 FNSILSNVGISLPCSGHNGSVVLQDEVCFIV 252
+N +LSN + C+ HNG+ + QD F V
Sbjct: 111 YNVVLSNCSVGEFCTLHNGACIGQDGFGFFV 141
>02_04_0231 +
21117887-21117935,21118710-21118825,21119049-21119144,
21119276-21119332,21119547-21119699,21119801-21119885,
21120022-21120139,21120278-21120442,21120795-21120914,
21121006-21121081,21121247-21121418,21121574-21122049,
21122130-21122320,21124348-21124583,21125799-21125959
Length = 756
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 4 SSEYATLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLEL 183
+++Y +NS + V FK R F+ + E F G ++GV S+S ++ DW L++
Sbjct: 290 ANKYLEAKNSK-ISVGMRFKMR--FEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLKV 346
>01_06_1372 + 36726129-36728240
Length = 703
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 527 ICSP*QLSQYVHSVVEMRNRDNLTANVVVYPVQCVGIYE 411
+CS ++ + +H +M+ + N N+V Y G+YE
Sbjct: 589 LCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYE 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,038
Number of Sequences: 37544
Number of extensions: 367398
Number of successful extensions: 811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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