Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021688
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)              141   4e-34
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        29   2.7  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         29   3.5  
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   8.1  
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)                     28   8.1  

>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score =  141 bits (342), Expect = 4e-34
 Identities = 61/91 (67%), Positives = 73/91 (80%)
 Frame = +3

Query: 234 EPCVFGYDETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCF 413
           E C    +E+YFILKY A  V  A+ET   +TEDGIEDAF+V GE+ E VKTG+WVGDCF
Sbjct: 372 ELCCISTEESYFILKYKADKVAEAQETKEGVTEDGIEDAFDVQGEIEEIVKTGVWVGDCF 431

Query: 414 IYTNTLNRINYYVGGEIVTVAHLDHTMYILG 506
           IYTN++NR+NYYVGGEIVT+AHLD  MY+LG
Sbjct: 432 IYTNSVNRLNYYVGGEIVTIAHLDRPMYLLG 462



 Score =  124 bits (300), Expect = 5e-29
 Identities = 55/85 (64%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   DSSEYATLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLE 180
           DSSEY  + + + +K+FKNFKERKSFKPE+GAE IFGG++LGV+S+SG+  +FYDWE  E
Sbjct: 297 DSSEYG-VRDGNKIKLFKNFKERKSFKPEFGAENIFGGHLLGVRSVSGL--TFYDWESTE 353

Query: 181 LVRRIEIQPRHVFWSESGNLVCLAT 255
           L+RRIEIQP+ VFWS+SG L C++T
Sbjct: 354 LIRRIEIQPKTVFWSDSGELCCIST 378



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +2

Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTEH 661
           RP Y+  G + K+N+LYL DK++ +          EYQTAVMR DFETA +VLPTIP + 
Sbjct: 456 RPMYL-LGYIPKDNKLYLADKDMGVVSYSLLLSVLEYQTAVMRQDFETAKQVLPTIPRDQ 514

Query: 662 R 664
           R
Sbjct: 515 R 515


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 299 GHNGSVVLQDEVCFIVAKHTRFPLSDQN 216
           G NGS+ LQ EVC  +A+  R  L +Q+
Sbjct: 184 GFNGSLPLQQEVCVRIARLNRLILGEQS 211


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -3

Query: 596 SGTPAQIVVMNKKQCLTLCRLGIICSP*QLSQYVHSVVEMRNR--DNLTANVVVYPVQCV 423
           SG PA  V     QC+ +C+      P  + +Y    V++       + A+V  Y  QCV
Sbjct: 222 SGMPAS-VFRYASQCVQVCQPVCSGMPASVFRYASQCVQVCQPVCSGMPASVFRYASQCV 280

Query: 422 GIYEAISDPYAC 387
            +Y+ +     C
Sbjct: 281 QVYQPVCSAVMC 292


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 282  CTSG*SMFHRSQTHKVPAFGPKHVTRLNLNTSDKFQMFPIVERECYSAD 136
            C  G    HRS T+  P  G K  T LNL T++         + CYS D
Sbjct: 1281 CADGQQRRHRSCTNPKPRCGGKDCTALNLPTTE--------TKACYSCD 1321


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 282  CTSG*SMFHRSQTHKVPAFGPKHVTRLNLNTSD 184
            C  G    HRS T+  P  G K  T LNL T++
Sbjct: 1296 CADGQQRRHRSCTNPKPRCGGKDCTALNLPTTE 1328


>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
          Length = 1387

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 213  VTRLNLNTSDKFQMFPIVERECYSADRLHAEHVASEYTFSTVLGLEAFSLLEILED 46
            V + NLN S+  Q +P++ R C   DRL  E V       T+       LLE +++
Sbjct: 946  VLQRNLN-SEILQTYPLLIRRCEELDRLVTESVTKSPESVTISFAVDHKLLEQIQN 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,424
Number of Sequences: 59808
Number of extensions: 443982
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)