Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021688
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70476-1|CAA49900.1|  906|Homo sapiens subunit of coatomer compl...   137   4e-32
BC000326-1|AAH00326.1|  906|Homo sapiens coatomer protein comple...   137   4e-32

>X70476-1|CAA49900.1|  906|Homo sapiens subunit of coatomer complex
           protein.
          Length = 906

 Score =  137 bits (331), Expect = 4e-32
 Identities = 70/138 (50%), Positives = 93/138 (67%)
 Frame = +3

Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
           +E++FILKY +  V  A+ET+  +TEDGIEDAFEV+GE+ E VKTG+WVGDCFIYT+++N
Sbjct: 482 EESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVN 541

Query: 435 RINYYVGGEIVTVAHLDHTMYILG*LLRRTDYXXXXXXXXLFLIHYYYLCWSTRQQ*CGA 614
           R+NYYVGGEIVT+AHLD TMY+LG + +  D         L +I Y  L      Q   A
Sbjct: 542 RLNYYVGGEIVTIAHLDRTMYLLGYIPK--DNRLYLGDKELNIISYSLLVSVLEYQ--TA 597

Query: 615 ILRLPIVSYPQFLPSIDK 668
           ++R       + LP+I K
Sbjct: 598 VMRRDFSMADKVLPTIPK 615



 Score =  136 bits (329), Expect = 7e-32
 Identities = 57/85 (67%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   DSSEYATLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLE 180
           DSSEYA  E++S VK+FKNFKE+KSFKP++GAE I+GG++LGV+S++G+A  FYDW++ E
Sbjct: 399 DSSEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLA--FYDWDNTE 456

Query: 181 LVRRIEIQPRHVFWSESGNLVCLAT 255
           L+RRIEIQP+H+FWS+SG LVC+AT
Sbjct: 457 LIRRIEIQPKHIFWSDSGELVCIAT 481



 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 33/54 (61%), Positives = 36/54 (66%)
 Frame = +2

Query: 503 GIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTEHR 664
           G + K+NRLYL DKELNI          EYQTAVMR DF  AD+VLPTIP E R
Sbjct: 565 GYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQR 618


>BC000326-1|AAH00326.1|  906|Homo sapiens coatomer protein complex,
           subunit beta 2 (beta prime) protein.
          Length = 906

 Score =  137 bits (331), Expect = 4e-32
 Identities = 70/138 (50%), Positives = 93/138 (67%)
 Frame = +3

Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
           +E++FILKY +  V  A+ET+  +TEDGIEDAFEV+GE+ E VKTG+WVGDCFIYT+++N
Sbjct: 482 EESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVN 541

Query: 435 RINYYVGGEIVTVAHLDHTMYILG*LLRRTDYXXXXXXXXLFLIHYYYLCWSTRQQ*CGA 614
           R+NYYVGGEIVT+AHLD TMY+LG + +  D         L +I Y  L      Q   A
Sbjct: 542 RLNYYVGGEIVTIAHLDRTMYLLGYIPK--DNRLYLGDKELNIISYSLLVSVLEYQ--TA 597

Query: 615 ILRLPIVSYPQFLPSIDK 668
           ++R       + LP+I K
Sbjct: 598 VMRRDFSMADKVLPTIPK 615



 Score =  136 bits (329), Expect = 7e-32
 Identities = 57/85 (67%), Positives = 77/85 (90%)
 Frame = +1

Query: 1   DSSEYATLENSSSVKVFKNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLE 180
           DSSEYA  E++S VK+FKNFKE+KSFKP++GAE I+GG++LGV+S++G+A  FYDW++ E
Sbjct: 399 DSSEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLA--FYDWDNTE 456

Query: 181 LVRRIEIQPRHVFWSESGNLVCLAT 255
           L+RRIEIQP+H+FWS+SG LVC+AT
Sbjct: 457 LIRRIEIQPKHIFWSDSGELVCIAT 481



 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 33/54 (61%), Positives = 36/54 (66%)
 Frame = +2

Query: 503 GIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTEHR 664
           G + K+NRLYL DKELNI          EYQTAVMR DF  AD+VLPTIP E R
Sbjct: 565 GYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQR 618


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,837,541
Number of Sequences: 237096
Number of extensions: 2062723
Number of successful extensions: 8133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8131
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)