Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021688
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 109 2e-24
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 103 1e-22
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 103 1e-22
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 103 1e-22
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 102 2e-22
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 32 0.41
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 32 0.41
At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6) iden... 30 1.6
At5g02630.1 68418.m00199 expressed protein 28 5.0
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 28 6.6
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 27 8.8
At3g21670.1 68416.m02732 nitrate transporter (NTP3) nearly ident... 27 8.8
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 109 bits (261), Expect = 2e-24
Identities = 47/90 (52%), Positives = 66/90 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILK+N +V+ + I E+GIEDAFE++ E NE V+TG+WVGDCFIYTN+
Sbjct: 482 DTSFYILKFNRDIVSSYFDGGKQIDEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSW 541
Query: 435 RINYYVGGEIVTVAHLDHTMYILG*LLRRT 524
R+NY VGGE+ T+ HLD MY+LG L ++
Sbjct: 542 RLNYCVGGEVTTMYHLDRPMYLLGYLANQS 571
Score = 77.8 bits (183), Expect = 6e-15
Identities = 34/83 (40%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
E+A E+S+ +K+F KNF+E+K+ +P + AE IFGG +L + S + F YDW L+
Sbjct: 401 EHAVRESSTKIKIFSKNFQEKKTVRPTFSAEHIFGGTLLTMCSSDFICF--YDWAECRLI 458
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
RRI++ ++++W++SG+LV +A+
Sbjct: 459 RRIDVTVKNLYWADSGDLVAIAS 481
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTEH 661
RP Y+ G +A ++R+YL DKE N+ EY+T VMRGD E A+ VLP+IP EH
Sbjct: 559 RPMYL-LGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLEQANEVLPSIPKEH 617
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 103 bits (246), Expect = 1e-22
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN +V+ ++ E+G+EDAFEV+ E +E V+TGIWVGDCFIY N+
Sbjct: 483 DTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSW 542
Query: 435 RINYYVGGEIVTVAHLDHTMYILG 506
++NY VGGE+ T+ HLD MY+LG
Sbjct: 543 KLNYCVGGEVTTMYHLDRPMYLLG 566
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
E A E+SS +K+F KNF+ERKS +P + AE IFGG +L + S + F YDW L+
Sbjct: 402 ECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICF--YDWAECRLI 459
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
++I++ ++++W+ESG+LV +A+
Sbjct: 460 QQIDVTVKNLYWAESGDLVAIAS 482
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTE- 658
RP Y+ G +A ++R+YL DKE N+ EY+T VMRGD + A+++LPTIP E
Sbjct: 560 RPMYL-LGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQ 618
Query: 659 HRQGSH 676
H +H
Sbjct: 619 HNNVAH 624
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 103 bits (246), Expect = 1e-22
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN +V+ ++ E+G+EDAFEV+ E +E V+TGIWVGDCFIY N+
Sbjct: 483 DTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSW 542
Query: 435 RINYYVGGEIVTVAHLDHTMYILG 506
++NY VGGE+ T+ HLD MY+LG
Sbjct: 543 KLNYCVGGEVTTMYHLDRPMYLLG 566
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
E A E+SS +K+F KNF+ERKS +P + AE IFGG +L + S + F YDW L+
Sbjct: 402 ECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICF--YDWAECRLI 459
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
++I++ ++++W+ESG+LV +A+
Sbjct: 460 QQIDVTVKNLYWAESGDLVAIAS 482
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTE- 658
RP Y+ G +A ++R+YL DKE N+ EY+T VMRGD + A+++LPTIP E
Sbjct: 560 RPMYL-LGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQ 618
Query: 659 HRQGSH 676
H +H
Sbjct: 619 HNNVAH 624
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 103 bits (246), Expect = 1e-22
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILKYN +V+ ++ E+G+EDAFEV+ E +E V+TGIWVGDCFIY N+
Sbjct: 483 DTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSW 542
Query: 435 RINYYVGGEIVTVAHLDHTMYILG 506
++NY VGGE+ T+ HLD MY+LG
Sbjct: 543 KLNYCVGGEVTTMYHLDRPMYLLG 566
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/83 (43%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
E A E+SS +K+F KNF+ERKS +P + AE IFGG +L + S + F YDW L+
Sbjct: 402 ECAVRESSSKIKIFSKNFQERKSIRPTFSAEKIFGGTLLAMCSNDFICF--YDWAECRLI 459
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
++I++ ++++W+ESG+LV +A+
Sbjct: 460 QQIDVTVKNLYWAESGDLVAIAS 482
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIPTE- 658
RP Y+ G +A ++R+YL DKE N+ EY+T VMRGD + A+++LPTIP E
Sbjct: 560 RPMYL-LGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQ 618
Query: 659 HRQGSH 676
H +H
Sbjct: 619 HNNVAH 624
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 102 bits (245), Expect = 2e-22
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLN 434
D +++ILK+N +VT ++ E+G+EDAFEV+ E +E V+TGIWVGDCFIY N+
Sbjct: 483 DTSFYILKFNRDLVTSHFDSGRPTEEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSW 542
Query: 435 RINYYVGGEIVTVAHLDHTMYILG 506
++NY VGGE+ T+ HLD MY+LG
Sbjct: 543 KLNYCVGGEVTTMYHLDRPMYLLG 566
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/83 (40%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 EYATLENSSSVKVF-KNFKERKSFKPEYGAEGIFGGYMLGVKSISGVAFSFYDWEHLELV 186
E A E+SS +K+F KNF+E++S +P + AE IFGG +L + S + F YDW L+
Sbjct: 402 ECAVRESSSKIKIFSKNFQEKRSIRPTFSAEKIFGGTLLAMCSSDFICF--YDWAECRLI 459
Query: 187 RRIEIQPRHVFWSESGNLVCLAT 255
+RI++ ++++W++SG+LV +A+
Sbjct: 460 QRIDVTVKNLYWADSGDLVAIAS 482
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 RPHYVHTGIVAKENRLYLNDKELNIXXXXXXXXXXEYQTAVMRGDFETADRVLPTIP-TE 658
RP Y+ G +A ++R++L DKE N+ EY+T VMRGD + A +LPTIP +
Sbjct: 560 RPMYL-LGYLASQSRVFLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDKASEILPTIPKDQ 618
Query: 659 HRQGSH 676
H +H
Sbjct: 619 HNSVAH 624
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 318 TDITEDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLNRINY 446
T I DG++DAF + ET + G DC +Y+ R+ +
Sbjct: 164 TTIRGDGLDDAFVSEHDCGETRRRGNRSDDCLVYSRKKGRVKF 206
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 YFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKTGIW-VGDCFIYTNTLNRI 440
Y +LK+++ + + R D E+ E +VG+ TGI V ++Y NT+ +
Sbjct: 319 YPLLKFSSLIEAKIRLEMIDEKEEEDEGQEVIVGDNATAFITGITSVRKLYLYANTIQVL 378
Query: 441 NYYVGGEIVTVAHLDH 488
++Y I +L H
Sbjct: 379 HHYFDPPIPEFVYLTH 394
>At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6)
identical to SKP1 interacting partner 6 GI:10716957 from
[Arabidopsis thaliana]
Length = 372
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 345 DAFEVVGEVNETVKTGIWVGDCFIYTNTLNRI-NYYVGGEIVTVAHLDHTMYILG 506
+ + + G + + + +WV DC + T R+ N VG E +D +Y++G
Sbjct: 127 EIYVIGGSIRDVPSSSVWVLDCRFH--TWRRVSNMRVGREFAAAGVIDGKIYVIG 179
>At5g02630.1 68418.m00199 expressed protein
Length = 428
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 166 WEHLELVRRIEIQPRHVFWSESGNLVCLATMKH 264
W H ++V+RI + + +S L+C A KH
Sbjct: 193 WNHKQIVKRIHLLMTALLLVKSLTLICAAVYKH 225
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 489 CGRDAQP*QSHRQRSSLSCSVC 424
C RD Q QS+ Q +L CS+C
Sbjct: 128 CRRDTQQEQSNEQEEALFCSLC 149
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens] GI:4337460
Length = 2376
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +3
Query: 246 FGYDETYFILKYNAAVVTRARETNTDITEDGIEDAFEVVGEVNETVKT 389
+G ++ IL+Y ++++ TN DIT + ++ E++ ++T++T
Sbjct: 1505 YGLKQSEVILRYLSSILCSEIWTNEDITAEILQVKEEILTFASDTIET 1552
>At3g21670.1 68416.m02732 nitrate transporter (NTP3) nearly
identical to nitrate transporter [Arabidopsis thaliana]
GI:4490323; contains Pfam profile: PF00854 POT family
Length = 590
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 330 EDGIEDAFEVVGEVNETVKTGIWVGDCFIYTNTLNRINYYVGGEIVTVAHLDHTMYI 500
+DG E+A++ G + KTG W+G I + L+ +G + V +L ++I
Sbjct: 11 KDGSEEAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHI 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,861
Number of Sequences: 28952
Number of extensions: 304474
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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