Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021687
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    32   0.080
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    28   1.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.9  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   9.2  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 513 LRSKTNVPGG---RSFTPNDIILRYYGKNSTVPTSYRFSEVNRLLADPTFDPKRPTV 674
           L+  TN   G   R FT N+ +L YY KN    +S     +N  LA    DPK+PTV
Sbjct: 261 LKKWTNYKSGYKLRWFTLNNGVLSYY-KNQDDASSACRGSINLKLARLVHDPKQPTV 316


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 584 TIVPEYNVVGCERPSPRNISFTSERR 507
           T+ P YN +G   PSP ++SFT + R
Sbjct: 438 TLPPRYNELG-SLPSPNSVSFTEDSR 462


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 558 NDIILRYYGKNSTVPTSYRFSEVNRLLADPTFDPKRPTVLFAHGYVEL 701
           N   L  Y +  T PTS   +    LLA  T     P  L  H ++EL
Sbjct: 387 NSYSLHVYPQKITAPTSPYAATQEELLAFTTIRQHLPDTLAFHKFLEL 434


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 718  TDSSVANSTYP*ANSTVGRLGSNVGSAKSLFTSL 617
            T SSV NS+ P  +STV    + + S+ +L TS+
Sbjct: 1249 TSSSVLNSSTPITSSTVVNSSTPITSSTALNTSI 1282



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 718  TDSSVANSTYP*ANSTVGRLGSNVGSAKSLFTS 620
            T SSV NS+ P  +STV    + + S+ +L TS
Sbjct: 1105 TSSSVLNSSTPITSSTVVNTSTPITSSTALNTS 1137



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 718  TDSSVANSTYP*ANSTVGRLGSNVGSAKSLFTS 620
            T SSV NS+ P  +STV    + + S+ +L TS
Sbjct: 2341 TSSSVLNSSTPITSSTVVNTSTPITSSTALNTS 2373



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 718  TDSSVANSTYP*ANSTVGRLGSNVGSAKSLFTS 620
            T SSV NS+ P  +STV    + + S+ +L TS
Sbjct: 2749 TSSSVLNSSTPITSSTVVNTSTPITSSTALNTS 2781


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 99  VSKYLFIYEKKKRSYCETFCTSHSYTIHKYA 191
           V  Y F Y K +   C   C +  YT+ + A
Sbjct: 270 VDSYYFAYPKDRNQECHAGCAAAFYTLGQIA 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,273
Number of Sequences: 5004
Number of extensions: 62470
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)