Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021687
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.60 
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)                  28   9.7  

>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 618 SEVNRLLADPTFDPKRPTVLFAHGYVELATDESVLRIVRAYVQRGGYNI 764
           S+V +L A  T+D K+ T + AHGY E  +   V  + +A +Q+   N+
Sbjct: 88  SDVKKLKAS-TYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNV 135


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 29/89 (32%), Positives = 40/89 (44%)
 Frame = +3

Query: 489 QHKQLLSALRSKTNVPGGRSFTPNDIILRYYGKNSTVPTSYRFSEVNRLLADPTFDPKRP 668
           Q KQ LS    + ++ G   F+  DI  R + K S +  +       RLL  P   PKR 
Sbjct: 625 QSKQRLSVKAKQCHLVGMDLFSHQDIFARLHQKFSWILKACGNRITERLLEGP---PKRL 681

Query: 669 TVLFAHGYVELATDESVLRIVRAYVQRGG 755
            V      +    D + +R+VRA  QRGG
Sbjct: 682 QVSLL---MRPDNDFTAVRLVRAIKQRGG 707


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           SR T YN  H T        +H   C+T  TT++T  +Y N  Y +
Sbjct: 41  SRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYT--VYNNQHYTL 84



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T        +H   C+T  TT++T  +Y N  Y++
Sbjct: 72  TRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYT--VYNNQHYRL 115



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 312 TEGFICI*SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           T G     +R T YN  H T        +H   C+T  TT++T  +Y N  Y +
Sbjct: 157 TRGTTISTTRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYT--VYNNQHYTL 208



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T        +H   C+T  TT++T  +Y N  Y +
Sbjct: 196 TRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYT--VYNNQHYTL 239



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T        +H   C+T  TT++T  +Y N  Y +
Sbjct: 227 TRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYT--VYNNQHYTL 270



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T   +    +H   C+T  TT++T  +Y N  Y +
Sbjct: 703 TRYTGYNNQHYTLHGSQQSALHATRCTTISTTRYT--VYNNQHYTL 746



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T   +    +H   C T  TT++T  +Y N  Y +
Sbjct: 610 TRYTGYNNQHYTLHGSQQSALHATRCKTISTTRYT--VYNNQHYTL 653



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T        +H   C+T  TT++T   Y N  Y +
Sbjct: 517 TRYTVYNNQHYTLHGVQQSALHATRCTTISTTRYTG--YNNQHYTL 560



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 288 SRETTYNKHHQTT*RTITMQIHINLCSTNLTTKHTCELYMNDSYKM 151
           +R T YN  H T        +H   C+T  TT +T  +Y N  Y +
Sbjct: 641 TRYTVYNNQHYTLHGVQQSALHATRCTTISTTGYT--VYNNQHYTL 684


>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
          Length = 405

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 562 SLGVNDLPPGTLVLLLSAERSCLC*KVVLVVADPHREALPVTTARSN 422
           +L  NDL PGT         +C C      +  P+RE+  VT   SN
Sbjct: 301 TLTPNDLEPGTFKCSRKRCTTCNCNIPTTRIIGPNRESYSVTCTTSN 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,168,612
Number of Sequences: 59808
Number of extensions: 454383
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)