Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021687
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF016655-7|AAY55855.1|  119|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 730 TILSTDSSVANSTYP*ANSTV 668
           T+++TD S  +ST+P ANST+
Sbjct: 405 TLITTDISAPSSTHPSANSTI 425


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 730 TILSTDSSVANSTYP*ANSTV 668
           T+++TD S  +ST+P ANST+
Sbjct: 405 TLITTDISAPSSTHPSANSTI 425


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 413 FMSQAVS*NHXXXXXXXXXXXYADNKLTLKSDDQLKASSVYDHARPLTINTIKQ 252
           F+ Q +S N            ++D+    K DD++K  SV DH R L+  + KQ
Sbjct: 11  FVPQQLSENVEEGRRNSFETLFSDSLKVRKRDDEVKVKSVVDHIRNLSRASEKQ 64


>AF016655-7|AAY55855.1|  119|Caenorhabditis elegans Hypothetical
           protein C17F4.12 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 579 YGKNSTVPTSYRFSEVNRLLADPTFDPKRPTV 674
           Y +NS +P    F E N +  +PT    RPT+
Sbjct: 33  YAENSQIPEISNFPEANSIQENPTTYGTRPTL 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,285
Number of Sequences: 27780
Number of extensions: 342680
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)