Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021686
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 1e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 70 3e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 63 4e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 47 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 4e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 4e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 4e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 44 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 4e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 8e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.004
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 35 0.009
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.020
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.047
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.047
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.047
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.062
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 32 0.083
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 30 0.33
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 2.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.2
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 9.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.5
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.5 bits (232), Expect = 1e-21
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN 509
K +G++ PTPIQ Q WP+AMSG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD 161
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.1 bits (164), Expect = 3e-13
Identities = 27/49 (55%), Positives = 42/49 (85%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELA 504
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++GY++PT IQAQ P SG++
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.9 bits (146), Expect = 4e-11
Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELA 649
K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELA
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELA 649
++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRELA
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELA 127
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
K+LV A TGSGKTLAY+LP + + G G AL++APTRELA
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELA 85
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELA 649
K+LV A+TGSGKT AY++P + + Q I G AL+L PTRELA
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELA 101
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELA 124
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/49 (44%), Positives = 36/49 (73%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELA 249
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
PI F+E + +++G+K YKEPTPIQA WP ++G++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRD 204
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+++VG+A+TGSGKT A+++P I H+ + AL+L+P RELA
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELA 152
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTREL 646
AQTGSGKTLAY+LP + + P R G A+++APTREL
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTREL 228
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
K++VG A TGSGKT A+I+P + + +P ++ L+L PTRELA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELA 343
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDG 610
K+ G + + ++++G A+TGSGKTLA+++P I ++ P R G G
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG 163
Query: 611 PIALVLAPTRELA 649
++++PTRELA
Sbjct: 164 --VIIISPTRELA 174
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+ +G A+TGSGKT A+ LP I + P G AL+L PTRELA
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELA 88
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 619
G + S + ++ + +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 620 LVLAPTRELA 649
LV+APTRELA
Sbjct: 196 LVVAPTRELA 205
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 32.7 bits (71), Expect = 0.047
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 13/61 (21%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 643
++L+ AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 644 L 646
L
Sbjct: 267 L 267
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 646
++L+ A TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
A+TG+GKTLA++L A + P +++L+PTRELA
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELA 125
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+ ++G +Q+G+GKT A+ L + ++ P P A+ LAP+RELA
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELA 197
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G +R + + ++++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 626 LAPTRELA 649
L PTRELA
Sbjct: 118 LVPTRELA 125
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 521 AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTREL 646
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTREL 217
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.047
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 509 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 646
L+ V TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.047
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 509 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 646
L+ V TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.062
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G + A S + ++++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 626 LAPTRELA 649
L+PTRELA
Sbjct: 95 LSPTRELA 102
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.9 bits (69), Expect = 0.083
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G +R A + ++++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 626 LAPTRELA 649
LAPTRELA
Sbjct: 93 LAPTRELA 100
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.33
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
D+G + + S + +++ A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 620 -LVLAPTRELA 649
LVL TRELA
Sbjct: 122 VLVLCHTRELA 132
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +3
Query: 225 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 386
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 387 IQYFEEANFPDYVQQGVKT 443
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIV 571
K++ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 643 LSGRRQDQSNRTITSPNRRL 584
LSG+R D S RT+ SP+ L
Sbjct: 350 LSGKRVDFSGRTVISPDPNL 369
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 267 PFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 392
PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 117 PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 268 LSTKTFMIHILQFSKDHHMKSKSTEIIT 351
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGV 520
+N LQ D YS ++ S V KEL G+
Sbjct: 268 ENSLQTEDVYSQNQDESSEVVKELNGI 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,026
Number of Sequences: 5004
Number of extensions: 51063
Number of successful extensions: 180
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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