Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021686
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 60 2e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 57 1e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 2e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 49 4e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 5e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 46 4e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 3e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 42 6e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 41 8e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.009
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 36 0.022
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 35 0.050
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.066
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 33 0.15
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 33 0.15
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 31 0.62
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 30 1.4
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.9
SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05) 28 5.7
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.6
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++ + Y +PT IQ Q PIA+SG++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRD 556
Score = 70.1 bits (164), Expect = 1e-12
Identities = 28/48 (58%), Positives = 41/48 (85%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 646
++++G+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTREL 602
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3
Query: 312 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2
Query: 551 YILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+ILP IVHIN+QP ++ GDGPI LVL PTRELA
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELA 145
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 646
++++G+A+TGSGKTLAY LP + + + P GD P+AL+L PTREL
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTREL 157
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +3
Query: 270 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 449
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 450 YKEPTPIQAQGWPIAMSGKN 509
++ PTPIQ Q MSG++
Sbjct: 92 FQVPTPIQMQSLSCVMSGRD 111
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+K Y++PTPIQAQ P+ MSG++ +A
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 539 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
K +Y P + P I G IA+V+ PTRELA
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 4/53 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELA 649
++++GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELA
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELA 191
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRD 140
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 465 PIQAQGWPIAMSGKN*LA*LKRVPAKRWPTS 557
PIQ Q P+ +SG++ + K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/68 (39%), Positives = 37/68 (54%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G +R + L ++L+ AQTGSGKT AY+LP + + Q P+AL
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALC 557
Query: 626 LAPTRELA 649
+APTRELA
Sbjct: 558 VAPTRELA 565
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 360 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
VSG I F E F + + + GY+ PTP+Q PI M+G++ +A
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMA 521
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 613
+D G+ +S Y ++++G A+TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 614 IALVLAPTRELA 649
LV+APTRELA
Sbjct: 149 KVLVMAPTRELA 160
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 491
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 492 AMSG 503
G
Sbjct: 197 MAHG 200
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +2
Query: 437 KDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 616
KD G +A ++L+G A+TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 617 ALVLAPTRELA 649
++++PTREL+
Sbjct: 647 VIIISPTRELS 657
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
++++G A+TGSGKTLA+++P I + Q DG ALV++PTRELA
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELA 135
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
++ F + G+ G+ PT IQ QG P+A+SG++
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRD 89
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 351 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++ +A
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 753
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELA 649
++++ AQTGSGKT A++LP + + N P A+ +APTRELA
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELA 801
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 351 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++ +A
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 176
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVW-KELVGVAQTGSGKTLAYILPAIVHIN-------NQPPI 595
D G + S + + ++ ++++G A+TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 596 -------RRGDGPIALVLAPTRELA 649
+G +AL++APTRELA
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELA 231
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
K+++G+A+TGSGKT A+ LP + + + P AL+L PTRELA
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELA 45
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
++ +G A+TGSGKT A+ LP + + + P G A+VL PTRELA
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELA 88
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
K++V +A+TGSGKT A+++P + G AL+L+PTRELA
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELA 364
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +2
Query: 509 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELA 649
++ AQTGSGKTLAY+ P +VH + R G P A ++ P RELA
Sbjct: 418 VICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELA 468
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELA 649
++++ AQ+G+GKT + + + I+ + G D ALVLAPTRELA
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELA 172
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +2
Query: 446 GLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 625
G ++ A + ++++ AQ+G+GKT + + + I+ Q +R P ALV
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70
Query: 626 LAPTRELA 649
L+PTRELA
Sbjct: 71 LSPTRELA 78
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 473 SSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
+S + + + K++ A TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELA 94
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ V +G+ PTPIQA P+A+ GK+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKD 49
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.1 bits (77), Expect = 0.050
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 431 RCKDNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 610
+ K G+ + L + K L+ ++TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 611 PIALVLAPTRELA 649
I ++ PTRELA
Sbjct: 228 TI--IVVPTRELA 238
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 628
+++ GVA GSGK LAY+LP I I + +GP+ L+L
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G + + + ++++ A+ G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 620 LVLAPTRELA 649
LVL PTRELA
Sbjct: 119 LVLVPTRELA 128
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 440 DNGLQRTDAYSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 619
+ G + + + ++++ A+ G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 620 LVLAPTRELA 649
LVL PTRELA
Sbjct: 119 LVLVPTRELA 128
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*LKRVPAK 542
FE+ + G+ G+ +P+PIQ + P+A++G++ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 503 KELVGVAQTGSGKTLAYILPAIVHINNQPP 592
++L+ AQTGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 387 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
I FE+ + + + V GYK+PTP+Q PI ++ +A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 226 QNMRRPDWDSFHSNLSTKTFMIHILQFSKD 315
+N RR WDSFHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 485
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 482 LADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 649
LAD V ++ +Q+G+GKT A++L + ++ P P + L+PT ELA
Sbjct: 138 LADPPV--NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELA 186
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 348 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 500
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 282 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 422
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05)
Length = 243
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 470 SSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 604
S SRL+ + W E V A +GS +P ++ + N PP +RG
Sbjct: 143 SPSRLSSALKWSEKVKEANSGS-------VPMVLVVENIPPSKRG 180
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 232 CSDLQRILFSHQILQILQIYCHRC-QIETN 146
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 163 CQIETNYRRICCLLQIWN-HRFHGYYSS 83
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,461
Number of Sequences: 59808
Number of extensions: 379220
Number of successful extensions: 985
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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