Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021685
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 4.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.6
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 5.6
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 7.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 7.4
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 7.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 9.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 9.7
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 241 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 155
+PWS V +L G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 596 EASMATETGPTVATASISFCSSPSGMSTKPRP 501
+A AT P+ +SI ++PS STKP P
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSP 484
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 317 SLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 457
SL EQ NL+ QY NG + Y N +T + YPY G
Sbjct: 28 SLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 277 SSSRAEGPHEPHFPWSLMSVTAPCFLQ 197
SSS PH H S M+ PCFL+
Sbjct: 296 SSSIIHNPHPTHPSASAMNYMNPCFLE 322
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 407 IKDNGGIDTEQTYPYEGVDDKCRYN 481
IK NGGI T P +D K YN
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYN 204
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 514 VDIPEGDEQKLMEAVATVGPVSVAID 591
+D+P G + L+ A T P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 287 QHFRQSGYLVSLSEQNLIDCSEQYGN 364
QHF + G + QN+ C EQ N
Sbjct: 947 QHFGKQGTIFDFHSQNMRQCREQLHN 972
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 160 MNLAPRTLPPFMYRFLLCLAVLLKPFI 80
M++AP L + F CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 374 NGGLMDNAFKYIKDNGGIDTEQTY----PYEGVDDKCR-YNPKNTGAEDVASWTSPRATN 538
+G ++DN KDN G+D +Q + Y GV K PK + +VA + P N
Sbjct: 229 DGTILDNLVTLRKDNTGLDIKQLFIGSEGYLGVITKLSVICPKRPSSTNVAFFGVPSYEN 288
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 377 GGLMDNAFKYIKDNGGIDTEQTY 445
G L ++ K+I+DNGGI T + +
Sbjct: 273 GELTNSMVKFIQDNGGIVTVEDF 295
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 205 STAPSPTSRTKGSVAHA----VLQHDWSFGRTALP 297
S+APSP + + +V HA L SFG ++LP
Sbjct: 113 SSAPSPNKKEETNVVHANEDISLDKRQSFGSSSLP 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,102
Number of Sequences: 5004
Number of extensions: 49178
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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