Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021684
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.2  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    28   1.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.3  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   8.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.3  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 685  HDATSGKVFLPQEKALSVIIRAIGFLLSKVNGMGKLESFNAVS 557
            H+  + K   P  KA   ++R   +L SKV  + K + FNA S
Sbjct: 1646 HEMETLKHASPTFKAYQFVVRICHYLTSKVKSINKDQVFNAFS 1688


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 573 DSSLPMPLTLESRKPIARMITDNAFSCGRNTLPLVASCPP 692
           D   P+PLTL    PI  +I         +T+ LV SCPP
Sbjct: 29  DLKFPLPLTLSRSTPINPIIRS-------DTIQLVISCPP 61


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 398  VAALVLNMFS--TFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYFWQVSK 237
            V  LV N++S  T +  + + PYR+  +E   +   +   + + E++G Y  +V+K
Sbjct: 1449 VLELVFNVYSEKTPVFFTHLVPYRLYEAEVLAEAGEVSAARKYCELIGNYLNRVAK 1504


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 380 NMFSTFIVLSLINPYRVDASEENIQMSN 297
           +++ T+ +L  +NP  VD  E  I++SN
Sbjct: 21  SIYKTYQILESLNPKDVDTKENYIKLSN 48


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 99  IAWVMGVPSSEALQVGSIMATKLVSNE 19
           + W+MG P+ E  Q GS+  T  VSN+
Sbjct: 320 MTWIMGSPTKEKSQWGSVSTTG-VSNQ 345


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 167 PPLLAGLATASPSRASWATSS 105
           PP L  L TASP   SW   S
Sbjct: 357 PPNLLNLPTASPESTSWLPGS 377


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 114 YIFYPIAWV-MGVPSSEALQVGSIMATKLVSNEFVAMMD 1
           ++FYPI WV  G  ++  +     M T  VSN+     D
Sbjct: 363 FLFYPIYWVCYGQMTNNLISQAGQMQTGNVSNDLFQAFD 401


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 TQHFEEALTFVQV-GHLDVFFTGINTVRIDQRQHDKGAEHVQYQR 392
           ++H E  L    V   L VFFTGI     DQ  H     HV + R
Sbjct: 372 SEHSENGLPSYNVFPALTVFFTGIMMSAHDQTNHVSTVIHVLWGR 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,093
Number of Sequences: 5004
Number of extensions: 66444
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)