Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021684
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992...    33   0.23 
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722...    30   1.6  
02_04_0147 + 20194244-20195717,20195953-20195969                       30   1.6  
08_02_1074 + 24135988-24137454                                         30   2.1  
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461...    29   2.8  
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    29   2.8  
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347...    29   2.8  
06_03_0382 - 20142830-20144329                                         28   6.5  
03_02_0705 - 10545748-10546482                                         28   6.5  
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542...    28   6.5  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    28   8.6  

>04_03_0178 +
           12298502-12298878,12298896-12298998,12299211-12299271,
           12299423-12299486,12299825-12299996,12300765-12300863
          Length = 291

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 377 CSVPAQQRRISVPAWSCMHQRWTSTRWTLPWQPWCTYDYGRFCRDIF 517
           CS P + R  +     C+ Q WTS     PW  W  Y+ GR CR  F
Sbjct: 245 CSTPNKLRSHNTEFSLCVLQPWTSR--GCPW-GWKNYENGRACRGFF 288


>06_03_1362 +
           29571324-29571564,29571746-29571921,29571972-29572251,
           29572949-29573085,29573174-29573401
          Length = 353

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
 Frame = +1

Query: 49  TAHLQCFTGRNTHHPCN-----RIEDVAQDALEGDAVAKPASNGGK----QCVQRGDQGD 201
           T H  C    N +H C+     RI D A+  LE      P+++ GK    Q    G   D
Sbjct: 52  TVHPDCINASNPYHVCSEYCFKRIAD-AKSGLERAEQEPPSADAGKSDAAQAEGGGGDDD 110

Query: 202 KANQHRGNDNGNFETCQKYSPSISKKL*PSCRLDIWMFSSL 324
              +  G+D+G  +  +K       +L  S     W+F SL
Sbjct: 111 AEQEDAGSDDGYPQMTEKQKKLFELRLKMS-----WVFISL 146


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 85  HHPCNRIE--DVAQDALEGDAVAKPASNGGKQCVQRGDQGDKANQHRGNDN 231
           HHP   +   D  + A  GD  A+ A+NGG Q     DQ    N     +N
Sbjct: 16  HHPPAIVANGDDQEPAANGDDQAEAAANGGDQAAAANDQAAAENDQAAAEN 66


>08_02_1074 + 24135988-24137454
          Length = 488

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 669 PLVASCPPSSAASIT 713
           PL+ASCPPSS A++T
Sbjct: 70  PLLASCPPSSVATVT 84


>11_03_0146 +
           10744403-10744603,10745199-10745834,10745967-10746125,
           10746398-10747036,10748018-10748151,10748281-10748464,
           10748882-10749217,10751659-10751945,10752863-10753253,
           10753351-10753615,10753740-10753818,10754123-10754543
          Length = 1243

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 480 HHGCHGNVHRVDVHRWCIHDHAGTEIRRCCAGTEHVQHLYRAVADQSLP 334
           HHGC+G+    D H   IH +A T +        ++  +   VADQ  P
Sbjct: 424 HHGCNGSPSAFDQH--TIHPNAPTHVSPSMEIVPYIPPVRLEVADQPHP 470


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 160 NGGKQCVQRGDQGDKANQHRGNDNGNFETCQKYSP 264
           +G   C + G  GD A Q +GN   NF+    Y P
Sbjct: 725 SGSSLCEESGVAGDSAEQQKGNST-NFDVTASYFP 758


>03_01_0453 -
           3471656-3471819,3472416-3472580,3473062-3473145,
           3473304-3473375,3473496-3473574,3473894-3473990,
           3474064-3474116,3474257-3474386,3474464-3474498,
           3476108-3476212,3476759-3476833,3477671-3477799,
           3477918-3478097,3478737-3478820,3478943-3479059,
           3479170-3479242,3479316-3479437,3479519-3479641,
           3479917-3479989,3480218-3480396,3480699-3480837,
           3481105-3481259,3481570-3481875
          Length = 912

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 527 KVFRLTQNQGADGVKGFQFAHAVDFGEQETNCADDHRQRFFLWQEHFAAGGIMPA 691
           +++R   N G D  K     H   F   ETN  D+H++ + L   HF A    PA
Sbjct: 482 RLWRNPSNGGHDD-KAHPPIHPTKFSAGETNWTDNHKKLYELVVRHFLACCSQPA 535


>06_03_0382 - 20142830-20144329
          Length = 499

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 543 PRIRELTALKDS-SLPMPLTLESRKPIARMITDNAF 647
           P + EL  ++DS SLP+PL L  R  + R  + NAF
Sbjct: 329 PALSELDRMEDSASLPLPLPLPPRPRMPRPKSLNAF 364


>03_02_0705 - 10545748-10546482
          Length = 244

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 416 AWSCMHQRWTSTRWTLPWQPWCTYDYGRFCRDI 514
           +W+ MH    +  W + ++     D+GRFC  +
Sbjct: 107 SWASMHMEGMAELWMMTYEKRHERDWGRFCEAV 139


>02_01_0725 -
           5422477-5422641,5422721-5422792,5422876-5422958,
           5423113-5423173,5423305-5423381,5423456-5423522,
           5423770-5423803,5423894-5423974,5424285-5424436,
           5424529-5424615,5425019-5425126,5425906-5426259
          Length = 446

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 588 MPLTLESRKPIARMITDNAFSCGRNTLPLVASCPP 692
           MPL+   + PI   I+ N+F  G     L+ SCPP
Sbjct: 413 MPLSSPKKMPIRAAIS-NSFGFGGTNTSLLFSCPP 446


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 639 NAFSCGRNT-LPL-VASCPPSSAASITR 716
           N   CGR T  PL +A+CPP S  SI R
Sbjct: 65  NTVRCGRYTSTPLDIAACPPLSVLSICR 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,356,758
Number of Sequences: 37544
Number of extensions: 507905
Number of successful extensions: 1620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)