Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021684
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               32   0.41 
SB_30633| Best HMM Match : Nucleos_tra2_C (HMM E-Value=2.9e-14)        32   0.54 
SB_23371| Best HMM Match : SRCR (HMM E-Value=0)                        31   0.72 
SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)                       29   2.9  
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.8  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 29   3.8  
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)                   29   3.8  
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.8  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           29   5.0  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    29   5.0  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_28085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)                 28   8.8  
SB_8136| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -1

Query: 298 TCTKVRASSKCWVNTSGRFQSCHYRCRDADWL--YRPDRRAERTVCHRYW 155
           TC     +  C     G   S   + RD+DW   +  DR   R VCH YW
Sbjct: 263 TCQSTTGAKVCSQGWYGEDCSTFCKARDSDWFGHFDCDRNGSR-VCHMYW 311


>SB_30633| Best HMM Match : Nucleos_tra2_C (HMM E-Value=2.9e-14)
          Length = 186

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 123 ILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMD 1
           I  Y+F P+A+VMGV  ++   V   +  K+  NE ++ ++
Sbjct: 2   ICSYVFMPLAFVMGVEWADCGPVAKFLGIKVFLNELISYIN 42


>SB_23371| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 345

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 88  HPCNRIEDVAQDALEGDAVAKPASNGGKQCVQRGDQGDKANQHRGNDNGN 237
           H CN  ED A   L     A P    G      GD G+  + + G D+GN
Sbjct: 113 HNCNHREDAAVACLHDAPDANPGYAPGDDGDGGGDDGNGGDNNGGGDDGN 162


>SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 640 LSVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSE 533
           + VII+ + +L+    G   +ES NA  ++ +GQ+E
Sbjct: 296 MQVIIKKLAWLMQVTMGTSAVESLNAAGNIFVGQTE 331


>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
          Length = 474

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 604 SKVNGMGKLESFNAVSSLILGQSE-NFIAYKDISAKSPVIVCTPWLPRQCPPCRCPSLVH 428
           SK N + +L+     S   L      ++A++  ++  P++     +P  CP CRC  L H
Sbjct: 329 SKANDLARLQELTQKSFAFLRSCRCQYLAHRVDASILPIVS----MPVSCPSCRCQYLAH 384


>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 522

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431 AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
           AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 362 AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 418

Query: 251 W 249
           W
Sbjct: 419 W 419


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431 AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
           AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 732 AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 788

Query: 251 W 249
           W
Sbjct: 789 W 789


>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1022

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431  AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
            AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 921  AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 977

Query: 251  W 249
            W
Sbjct: 978  W 978


>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431 AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
           AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 337 AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 393

Query: 251 W 249
           W
Sbjct: 394 W 394


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431  AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
            AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 984  AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 1040

Query: 251  W 249
            W
Sbjct: 1041 W 1041


>SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 483 VHHGCHGNVHRVDVHRWCIHDHAGT 409
           +HH  HG +  V V     HDH GT
Sbjct: 194 LHHNIHGELVNVSVSNTARHDHMGT 218


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 431  AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
            AYMT++ PK   AA V N ++T  V SL+   +V  S      SN +   S  EM+    
Sbjct: 1068 AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKSAARFVTSNYNYKASTTEMVESLG 1124

Query: 251  W 249
            W
Sbjct: 1125 W 1125


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 546 WVSLKTLLPIKISRQNLP*SYVHHGCH-GNVHRVDVHRWCIH 424
           W+S   L P+ +SR  +   +V  GCH    H+   H+W  H
Sbjct: 842 WLSPVVLSPVVLSRVAVTSGFVTSGCHQWFCHQWFCHQWFCH 883


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/94 (26%), Positives = 37/94 (39%)
 Frame = +1

Query: 142 VAKPASNGGKQCVQRGDQGDKANQHRGNDNGNFETCQKYSPSISKKL*PSCRLDIWMFSS 321
           V  P+ +GG++  +R   G    ++   D+G+ E        + K          W  SS
Sbjct: 332 VTDPSGHGGERLAERRHNGRDCRRYGQPDSGDGEAV------LLKMALMRSHSGFWFSSS 385

Query: 322 LASTR*GLISDSTIKVLNMFSTSAATTYFGSSMV 423
             S     ISDS   + +  S    T   GSSMV
Sbjct: 386 RFSRSSSSISDSLSSLRSRASWRRLTDVLGSSMV 419


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 292 TKVRASSKCWVNTSGRFQSCHYRCRDADWLYRPDR 188
           T VR+S   WV T GR +    R R+AD  + P R
Sbjct: 93  TSVRSSCNIWVLTVGRSKRGPRRPRNADTPFTPSR 127


>SB_28085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 499 SPVIVCTPWLPRQCPPCRC 443
           SP+I C  W P  CPP  C
Sbjct: 37  SPMIPCWAWDPGYCPPHEC 55


>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
          Length = 453

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -3

Query: 431 AYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYF 252
           AYMT++ PK   AA V N ++T  V SL+   +V  +      SN +   S  EM+    
Sbjct: 293 AYMTLVRPKLEYAAAVWNPYTTKDV-SLLE--QVQKTAARFVTSNYNYKASTTEMVESLG 349

Query: 251 W 249
           W
Sbjct: 350 W 350


>SB_8136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 236 TLKPARSIHPAFRRSSDLRA-GWTSGCFLHWHQ 331
           T K  R IHP  RRSSD      T  CF   H+
Sbjct: 26  TTKSLRMIHPTIRRSSDTEVPPITRKCFASIHE 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,561,785
Number of Sequences: 59808
Number of extensions: 551995
Number of successful extensions: 2380
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)