Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021684
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.55 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 552  RELTALKDSSLPMPLTLESRKPIARMITDNAFSCGRNTLPLVASCPPSS 698
            R+ +  KDSS    L L+   P        A+SCG  ++P     PPSS
Sbjct: 1249 RQRSLFKDSSPATALMLQHAPP--------AYSCGTVSVPQQQQLPPSS 1289


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 112  VAQDALEGDAVAKPASNGGKQCVQRGDQ 195
            +AQD+ E ++   P+++GG+   +R ++
Sbjct: 1344 LAQDSSEDESYRGPSASGGRPVPERPER 1371


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 83  VFLPVKHCKW 54
           +F+PVK C W
Sbjct: 228 IFVPVKPCPW 237


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 366 GAEHVQYQRSNDVF 407
           GA +VQYQ   D+F
Sbjct: 290 GANNVQYQGVQDIF 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,386
Number of Sequences: 438
Number of extensions: 4665
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)