Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021684
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63180.1 68416.m07097 expressed protein                             30   1.8  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    29   2.4  
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co...    29   2.4  
At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protei...    29   4.1  
At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protei...    29   4.1  
At1g67300.2 68414.m07660 hexose transporter, putative similar to...    28   5.5  
At1g67300.1 68414.m07659 hexose transporter, putative similar to...    28   5.5  
At4g31610.1 68417.m04490 transcriptional factor B3 family protei...    27   9.5  
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    27   9.5  

>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 585  PMPLTLE-SRKPIARMITDNAFSCGRNTLPLVASCP 689
            P+PL+ E +  P +     N+  CGR   P++ SCP
Sbjct: 935  PVPLSQEHTENPASGSTQKNSPVCGRTVPPIITSCP 970


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 28  NQFGRHDTAHLQCFTGRNTHHPCNRIEDVAQ--DALEGDAVAKPASNGGK 171
           NQ+  H+ A +         H   R   ++Q   ALEGDA     S GGK
Sbjct: 574 NQYEPHEMAQMVACAAAAVRHSARRRPKMSQIVRALEGDATLDDLSEGGK 623


>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 573

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 637 SVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDISAKSPVIVCTPWLPR 464
           S I R I FLL K++   +L +  A+S L L  + N++  K  S+    ++   W+ +
Sbjct: 391 SRISRLILFLLCKIDAKSRLYNDVALSYLFLINNVNYVVVKVRSSNLKTVLSEDWVKK 448


>At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protein
           similar to Pre-mRNA cleavage complex II protein Clp1
           (Swiss-Prot:Q92989) [Homo sapiens]
          Length = 444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -1

Query: 655 PQEKALSVIIRAIGFL--LSKVNGMGKLESFNAVSSLILGQSENFIAYKDI-SAKSPVIV 485
           P+ +A  ++I  +G++  +     +  +++FNA   L+LGQ + F   KD+  +KS V V
Sbjct: 235 PESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDV 294


>At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protein
           similar to Pre-mRNA cleavage complex II protein Clp1
           (Swiss-Prot:Q92989) [Homo sapiens]
          Length = 444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -1

Query: 655 PQEKALSVIIRAIGFL--LSKVNGMGKLESFNAVSSLILGQSENFIAYKDI-SAKSPVIV 485
           P+ +A  ++I  +G++  +     +  +++FNA   L+LGQ + F   KD+  +KS V V
Sbjct: 235 PESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDV 294


>At1g67300.2 68414.m07660 hexose transporter, putative similar to
           hexose transporters from Solanum tuberosum [GI:8347246],
           Nicotiana tabacum [GI:8347244], Arabidopsis thaliana
           [GI:8347250]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 494

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 491 YGRFCRDIFIGNKVFRLTQNQGADGVKGFQFAHAV 595
           YGR  R +FIG+ +F L Q  G + V  F F+  V
Sbjct: 287 YGRHSRVVFIGSTLFALQQLSGINAV--FYFSSTV 319


>At1g67300.1 68414.m07659 hexose transporter, putative similar to
           hexose transporters from Solanum tuberosum [GI:8347246],
           Nicotiana tabacum [GI:8347244], Arabidopsis thaliana
           [GI:8347250]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 493

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 491 YGRFCRDIFIGNKVFRLTQNQGADGVKGFQFAHAV 595
           YGR  R +FIG+ +F L Q  G + V  F F+  V
Sbjct: 287 YGRHSRVVFIGSTLFALQQLSGINAV--FYFSSTV 319


>At4g31610.1 68417.m04490 transcriptional factor B3 family protein /
           reproductive meristem protein 1 (REM1) similar to
           reproductive meristem gene 1 from [Brassica oleracea
           var. botrytis] GI:3170424; contains Pfam profile
           PF02362: B3 DNA binding domain; identical to cDNA
           reproductive meristem protein 1 (REM1) GI:13604226
          Length = 517

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 467 TAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHE 288
           T +S  + +I G    +L P   V+  V N+     ++  +N  R   +E      NL  
Sbjct: 436 TQVSNRTNTISGNLQRLLPPSCSVSDQVANVKQG--IVDSLNTVRQCRTELETSEQNLQA 493

Query: 287 GQSFFEMLGEYFWQVSKL 234
                + LGE  W +SK+
Sbjct: 494 SLLAIDALGERIWGISKI 511


>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 73  GRNTHHPCNRIEDVAQDALE-GDAVAKPASNGGKQCVQRGDQGDKANQHRGNDNGN 237
           G    + C  +   A+D  + G   +     GG+ C   G+ G  A   RG   GN
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,072,147
Number of Sequences: 28952
Number of extensions: 373247
Number of successful extensions: 1100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)