Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021682
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    37   0.003
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.39 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   4.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   6.3  

>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +3

Query: 33  MPSAANAKSEKPASSEDKDTPIRQIMTIIEH---KIRNLEKRKSKLTSYRDLQKA-GKEL 200
           MPS  N K+ +  +    +  +  +  I+EH   +IRN  K+K K+    ++  +    L
Sbjct: 1   MPSQGNNKNSENITQNPIEGELGSV--IVEHLTKRIRNFTKKKQKILKLEEIAASDSNSL 58

Query: 201 NSDQKVAVAKYDEVAQTLN 257
           N DQ+ A+   D V  TLN
Sbjct: 59  NDDQRKALQGKDAVLTTLN 77


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 45  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 218
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 219 AVAKYDEVAQTL 254
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 499 FIP*VTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPK-EVLGTTYLRIKEIVSTV--P 669
           FIP +TPK +   +  S       R ++   +  +GKP+   L T++  I  +   +  P
Sbjct: 214 FIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPRISRLHTSHASIDGLTDFIQSP 273

Query: 670 ECGYFD 687
             GY D
Sbjct: 274 SSGYLD 279


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 66  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 239
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 240 VAQ 248
           V Q
Sbjct: 193 VTQ 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,743
Number of Sequences: 5004
Number of extensions: 51871
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)