Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021682
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17910.1 68418.m02100 expressed protein                             31   1.0  
At3g55990.1 68416.m06221 expressed protein contains Pfam profile...    30   1.4  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    29   4.2  
At1g11400.2 68414.m01310 expressed protein                             29   4.2  
At1g11400.1 68414.m01309 expressed protein                             29   4.2  
At5g27330.1 68418.m03263 expressed protein                             28   5.5  
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    28   7.3  
At3g06670.1 68416.m00786 expressed protein                             28   7.3  
At1g71150.1 68414.m08210 expressed protein  ; expression support...    28   7.3  
At5g35810.1 68418.m04303 hypothetical protein                          27   9.6  
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr...    27   9.6  
At1g56420.1 68414.m06489 expressed protein ; expression supporte...    27   9.6  

>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 99  RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVA 245
           RQ+  + E K+ ++   +S  T   D +K   E N+D++  +AK D V+
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVS 572


>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
           PF03005: Arabidopsis proteins of unknown function
          Length = 487

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 57  SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 233
           + KP    D+ TPI +I T+ ++  I+N +  +  + +   +Q + K++    +  V+K 
Sbjct: 56  TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115

Query: 234 DEV 242
           +EV
Sbjct: 116 EEV 118


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 725 LSSTSVIAPSTVLSKYPHSGTVDTISLIRRYVVPNTS 615
           +++ ++ A   V  K PH   V   S+I+RYV  N S
Sbjct: 51  INAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNS 87


>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 254
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 117 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTL 254
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 81  DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 212
           D++T IR +       IR LE  +   S++   RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -2

Query: 432 VLASALPICIRQSRISKTSFILL--VSAA*RTQASFLACFFASRSEEIAIAVTCFERSLA 259
           +LASA  + I  + +   + +LL     +  +++S +A   +   EE+A+    FER L 
Sbjct: 539 ILASAASVGIIIAVLLLVNILLLRKKKPSKASRSSMVANKRSYTYEEVAVITNNFERPLG 598

Query: 258 N*GFGQLHH 232
             GFG ++H
Sbjct: 599 EGGFGVVYH 607


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +3

Query: 39  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 218
           SA+N + EKPAS+  K+ P   +   +     +   R   L  Y D +         +K 
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731

Query: 219 AVAKYDEVAQTL 254
             A  DE  + L
Sbjct: 732 PEASEDEEGELL 743


>At1g71150.1 68414.m08210 expressed protein  ; expression supported
           by MPSS
          Length = 351

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 45  ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 149
           ++ KS K +SSE      R++ ++IEH +  L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337


>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 471 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 316
           + L A FV  +  VLA    + + + +  K S ILLV  A  T  SF+   F
Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321


>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 296

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +3

Query: 111 TIIEHKIRNLEKRKSKLT-SYRDL-QKAGKELNSDQ 212
           ++++H+IRN +  K ++T  Y++L  KA  E NSD+
Sbjct: 115 SLLDHEIRNHKSSKEQITQDYKNLTSKAQLEENSDE 150


>At1g56420.1 68414.m06489 expressed protein ; expression supported
           by MPSS
          Length = 183

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 725 LSSTSVIAPSTVLSKYPHSGTVDTISL 645
           +SS+SVI P  VL    + GT+D + L
Sbjct: 1   MSSSSVIKPEDVLEHLMNDGTIDALRL 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,982
Number of Sequences: 28952
Number of extensions: 256744
Number of successful extensions: 621
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)