Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZK85 Cluster: RNA recognition motif (RRM)-containing ...    35   1.6  
UniRef50_A5UQK4 Cluster: Putative uncharacterized protein precur...    34   2.8  
UniRef50_Q8IBN9 Cluster: Putative uncharacterized protein MAL7P1...    33   4.9  
UniRef50_Q5BZE3 Cluster: SJCHGC02553 protein; n=1; Schistosoma j...    33   4.9  
UniRef50_A0NDW7 Cluster: ENSANGP00000031412; n=1; Anopheles gamb...    33   6.5  
UniRef50_Q38D96 Cluster: RNA-binding protein, putative; n=3; Try...    33   8.6  
UniRef50_A1X158 Cluster: Foot protein 1 variant 1; n=2; Perna vi...    33   8.6  
UniRef50_Q25060 Cluster: LWamide neuropeptides precursor [Contai...    33   8.6  

>UniRef50_Q6ZK85 Cluster: RNA recognition motif (RRM)-containing
           protein-like; n=3; Oryza sativa|Rep: RNA recognition
           motif (RRM)-containing protein-like - Oryza sativa
           subsp. japonica (Rice)
          Length = 684

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 22/52 (42%), Positives = 26/52 (50%)
 Frame = +2

Query: 500 N*TTTTPTLSAIVEFKNKDSLEKALSEHGAVVEGHALSVAVESRAETAVLVG 655
           N  T  PT SA VEF +K+S E+ALS +G       L V   S  E A   G
Sbjct: 562 NAATGQPTGSAYVEFLHKESAERALSLNGTSFMARILKVVRRSSHEAAHFYG 613


>UniRef50_A5UQK4 Cluster: Putative uncharacterized protein
           precursor; n=4; Chloroflexaceae|Rep: Putative
           uncharacterized protein precursor - Roseiflexus sp. RS-1
          Length = 402

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 606 RSPWRWSHAPRPPCWWGVPYE 668
           R P+RW+ +PRPP  W VP+E
Sbjct: 330 RYPYRWALSPRPPEQWRVPFE 350


>UniRef50_Q8IBN9 Cluster: Putative uncharacterized protein
           MAL7P1.112; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL7P1.112 - Plasmodium
           falciparum (isolate 3D7)
          Length = 952

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 237 YAIVLFGLFWNFCFFNDIFSGLGFGCLSFSPRPFFWATMMTNCGI*IKNANNNCFTNSHK 58
           Y I  +  F N   +ND +S     C+  +  PF ++ ++ N    I+  N +C TN +K
Sbjct: 343 YLIYHYNYFQNIIKYNDNYSNFYSSCIKNNNTPFVFSLLLDN----IEKGNTDCQTNYYK 398


>UniRef50_Q5BZE3 Cluster: SJCHGC02553 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02553 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 246

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 530 AIVEFKNKDSLEKALSEHGAVVEGHALSVAVESRAETAVLVGGALRGQHGL 682
           A V+FK++ SL+KAL+ HGA +  +  ++ V    E     GG+  GQ G+
Sbjct: 47  AYVDFKDEQSLQKALATHGAKIGEY--TIRVNPANERPGRGGGSHGGQFGM 95


>UniRef50_A0NDW7 Cluster: ENSANGP00000031412; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000031412 - Anopheles gambiae
           str. PEST
          Length = 296

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 684 RSPCWPRRAPPTSTAVSARDSTATESACPST 592
           R PCW R    T+   S   ST T+ +CP+T
Sbjct: 31  RPPCWWRTISTTTRTTSRTSSTTTKRSCPAT 61


>UniRef50_Q38D96 Cluster: RNA-binding protein, putative; n=3;
           Trypanosoma|Rep: RNA-binding protein, putative -
           Trypanosoma brucei
          Length = 429

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
 Frame = +2

Query: 530 AIVEFKNKDSLEKALSEHGAVVEGHALSVAV------ESRAETAVLVG 655
           A V FK+K S+++AL ++G VVEG  + V        E   ET+V VG
Sbjct: 207 AYVLFKDKSSIKEALDKNGVVVEGRHIVVTTLDPEGREYAPETSVFVG 254


>UniRef50_A1X158 Cluster: Foot protein 1 variant 1; n=2; Perna
           viridis|Rep: Foot protein 1 variant 1 - Perna viridis
           (Tropical green mussel)
          Length = 561

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 546 KTKTVWKRRCRSTAPW--WRGTRSPWR-WSHAPRPPCWWGVPYEAST 677
           K  T WK    +  PW  W+ T  PW  W   P+P   W VP  A T
Sbjct: 314 KPWTAWKA---TPKPWTAWKATPKPWTAWKATPKPWTAWKVPPPAWT 357


>UniRef50_Q25060 Cluster: LWamide neuropeptides precursor [Contains:
           LWamide I; LWamide II; LWS]; n=2; Hydractinia
           echinata|Rep: LWamide neuropeptides precursor [Contains:
           LWamide I; LWamide II; LWS] - Hydractinia echinata
           (Snail fur) (Hermit crab hydroid)
          Length = 419

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 540 NSKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWG 656
           ++K   +W R  +    W R T+ P  W    +PP  WG
Sbjct: 259 DAKPPGLWGRDAKPPGLWGRDTKPPGLWGRDAKPPGLWG 297


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,159,577
Number of Sequences: 1657284
Number of extensions: 8632541
Number of successful extensions: 33141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33077
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)