Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       27   0.11 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   5.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 449 VLKTRGNQY-SQTWSNHCN*TTTTPTLSAIVEFKNKDSLEKALSEHGAVVEGH 604
           VL   G Q+ S TW N        PTLS+I   ++  S E+ + E G +   +
Sbjct: 260 VLSDHGTQFISNTWQNSLRAADIQPTLSSIRHPESNPS-ERVMRELGRIFRAY 311


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 11  CVMPVSCFYCI*FGVILCEFVKQLLLAFFI*IPQFVIMVA 130
           C +  +  YC     +LCE + +   +  I +P  +I V+
Sbjct: 407 CTLVTALVYCSLAIFVLCELLIEGTTSILINVPSLIIHVS 446


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  FVKQLLLAFFI*IPQFVIMV 127
           F KQLL+ F    P FV+++
Sbjct: 146 FTKQLLIKFVEVYPLFVLLI 165


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 465 EINTVKRGPIIVTELPQLRHYRL*SNSKT 551
           + N +   PI+   L +LRH  L  N  T
Sbjct: 498 DYNDLSAVPIVTHSLTELRHLSLEGNPIT 526


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,691
Number of Sequences: 336
Number of extensions: 2269
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)