Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021681
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 3.3
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 27 3.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 5.8
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.8
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 5.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 5.8
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 515 TPTLSAIVEFKNKDSLEKAL-SEHGAVVEGHALSV 616
+PTL A + F+NK S + A+ S +G+ +G+ L V
Sbjct: 64 SPTLFAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 125 VAQKKGRGLKLRQPNPSPLKMSLKKQKFQN-KPKRTMA 235
V Q GR + P+PSP+ S + Q+ P R MA
Sbjct: 458 VIQTSGRPKSMAPPSPSPISPSFPLHEIQSPMPNRRMA 495
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 125 VAQKKGRGLKLRQPNPSPLKMSLKKQKFQNKPKRT 229
V+ KK + R +P P K S+KKQK K + +
Sbjct: 49 VSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEES 83
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 437 AQGVVLKTRG-NQYSQTWSNHCN*TTTTPTLSAIVEFKNKDSLEKAL 574
AQ +VL + G YS W+ + T I++F N S +KAL
Sbjct: 295 AQELVLLSEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPSSDKAL 341
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 672 WPRRAPPTSTAVSARDSTATESACPSTTAPCSDSA 568
WP P +S+ ST E A + T C DSA
Sbjct: 129 WPEVLPQLMEMLSSPASTTQEGAFSALTKICEDSA 163
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 399 NLPSSYLFDYQEKLKELFSKH---GEINTVKRGPIIVT 503
N P S L DYQ K+ E S E+NT++ P V+
Sbjct: 255 NTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 615 WRWSHAPRP-PCWWGVPYEAST 677
W W+H+P+P +WG E +T
Sbjct: 691 WIWNHSPKPIQKFWGKSVELNT 712
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 651 TSTAVSARDSTATESACPSTTAPCSDSAFSRLSLFLNST 535
+S+ S +TAT S+ ST A S ++ S S LNST
Sbjct: 197 SSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 399 NLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELPQLRHYRL*SNSKTKTVWKRRCR 578
N+ + L+D+ E LKE +KHG N++ P+ Q+ + T +++RR
Sbjct: 571 NVNPTDLWDWAE-LKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVL 629
Query: 579 S 581
S
Sbjct: 630 S 630
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 540 NSKTKT-VWKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
NS +KT W R+ A W G ++P W+ R P W
Sbjct: 840 NSGSKTPAWNSGSRTPA-WNSGNKTP-AWNAGSRTPAW 875
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,731
Number of Sequences: 5004
Number of extensions: 36033
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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