Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347...    35   0.052
01_07_0139 - 41385823-41386656                                         31   0.64 
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    31   0.85 
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    28   6.0  
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309...    28   7.9  

>08_02_1176 +
           24931728-24931877,24933175-24933275,24934410-24934788,
           24935509-24936354,24936555-24936642,24936947-24937039,
           24937221-24937318,24937364-24937470,24938266-24938353,
           24938748-24939005
          Length = 735

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 22/52 (42%), Positives = 26/52 (50%)
 Frame = +2

Query: 500 N*TTTTPTLSAIVEFKNKDSLEKALSEHGAVVEGHALSVAVESRAETAVLVG 655
           N  T  PT SA VEF +K+S E+ALS +G       L V   S  E A   G
Sbjct: 613 NAATGQPTGSAYVEFLHKESAERALSLNGTSFMARILKVVRRSSHEAAHFYG 664


>01_07_0139 - 41385823-41386656
          Length = 277

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
 Frame = +3

Query: 429 QEKLKELFSKHGEINTVKRGPIIVTELPQLRHYRL*SNSKTKTVWKRRCRSTAPWW---- 596
           ++K  ++    G   TV R   +    P     R  S ++    W R   +T  W     
Sbjct: 195 KQKFVDVVFHQGAFYTVSRDAEVSAWTPDASRSRGRS-ARGSPSWCRSAAATCSWCLGCT 253

Query: 597 --RGTRSPWRWSHAPRPPCWWG 656
             RG  SPWR S   R P WWG
Sbjct: 254 SARGRGSPWRTSG--RRPSWWG 273


>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 387 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 491
           + V+NLP +     +EK+KE+F KHGE+  V   P
Sbjct: 317 IYVKNLPENAS---KEKIKEIFEKHGEVTKVVLPP 348


>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +3

Query: 387 LLVENLPSSYLFDYQEKLKELFSKHGEINTV 479
           + V+ +P+S+  D+ + LKE+F KHG+I +V
Sbjct: 413 IFVDGIPTSW--DHAQ-LKEIFKKHGKIESV 440


>10_01_0298 -
           3094197-3094307,3095093-3095253,3095462-3095666,
           3096349-3096534,3096616-3096756,3096843-3096959,
           3097046-3097456
          Length = 443

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 387 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 491
           + V+NLP +     +EK+KE+F  HGE+  V   P
Sbjct: 289 IYVKNLPENAS---KEKIKEIFEIHGEVTKVVLPP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,951
Number of Sequences: 37544
Number of extensions: 244685
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)