Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021681
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75) 31 0.87
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 29 2.7
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 29 3.5
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 29 4.6
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
>SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)
Length = 159
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR ST P W+ SP +W PP W
Sbjct: 36 WKRE--STPPQWKRDSSPPQWKRDSSPPQW 63
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 549 TKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
T WKR S+ P W+ SP +W PP W
Sbjct: 41 TPPQWKRD--SSPPQWKRDSSPPQWKRDSSPPQW 72
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR ST P W+ +P +W PP W
Sbjct: 126 WKRE--STPPQWKLESTPPQWKRDSSPPQW 153
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR S+ P W+ SP +W PP W
Sbjct: 81 WKRD--SSPPQWKRDSSPPQWKRDSSPPQW 108
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR S+ P W+ SP +W PP W
Sbjct: 90 WKRD--SSPPQWKRDSSPPQWKRDSSPPQW 117
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR S+ P W+ SP +W PP W
Sbjct: 108 WKRD--SSPPQWKQDLSPPQWKRESTPPQW 135
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR S+ P W+ SP +W PP W
Sbjct: 63 WKRD--SSPPQWKLDSSPPQWKRDSSPPQW 90
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 561 WKRRCRSTAPWWRGTRSPWRWSHAPRPPCW 650
WKR S+ P W+ SP +W PP W
Sbjct: 99 WKRD--SSPPQWKRDSSPPQWKQDLSPPQW 126
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 467 NQYSQTWSNHCN*TTTTPTLSAIVEFKNKDSLEKALS---EHGAVVEGHALSV-AVESRA 634
++Y +H T+ P LS EF+N D LEK LS E+G ++ A V A+E
Sbjct: 21 DRYHMELRSHGFQCTSIPVLS--FEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCI 78
Query: 635 ETAVLVGGA 661
E + + GA
Sbjct: 79 EEKISLSGA 87
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 669 PRRAPPTSTAVSARDSTATESACPSTTAP 583
P +PPT+T + ++TA + P TT P
Sbjct: 153 PPPSPPTTTTTTTPETTAPRTTTPETTTP 181
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
SKTK W ++ + W+ T++ W H + W P + ++
Sbjct: 490 SKTKANWYHPIKTQSNWYHPTKTQANWYHPTKTQANWYHPTKTQANW 536
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
+KT+ W ++ A W+ T++ W H + W P + ++
Sbjct: 230 NKTQANWNHPTKTQANWYHPTKTQANWYHPTKTQANWYHPSKTQANW 276
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
+KT+ W ++ A W+ T++ W H + W P + +++
Sbjct: 460 TKTQANWYHPSKTQANWYHPTKTQANWYHPSKTKANWYHPIKTQSNW 506
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVP 662
+KT+ W ++ A W+ T++ W H + W P
Sbjct: 510 TKTQANWYHPTKTQANWYHPTKTQANWCHPTKTQANWNHP 549
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
+KT+ W ++ A W+ T++ W H + W P + +++
Sbjct: 240 TKTQANWYHPTKTQANWYHPTKTQANWYHPSKTQANWYHPSKTQSNW 286
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
+KT+ W R ++ A W+ T++ W H + + P + ++
Sbjct: 140 TKTQANWYHRTKTQANWYHPTKTQANWYHPSKTQAYLCHPTKTQANW 186
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/46 (21%), Positives = 21/46 (45%)
Frame = +3
Query: 546 KTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
KT++ W ++ A W+ T++ W H + W P + ++
Sbjct: 501 KTQSNWYHPTKTQANWYHPTKTQANWYHPTKTQANWCHPTKTQANW 546
>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 402 LPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELPQL 518
+P S L+D + + +E++ + G +N KRG + + PQL
Sbjct: 246 IPGSVLYDAEMETREVWKRFGSLNFTKRGAMYRGD-PQL 283
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 663 RAPPTSTAVSARDSTATESACPSTTAPCSDSA 568
RAPPT+ AV+ + AT A +T AP + A
Sbjct: 324 RAPPTTGAVTTTGAPATTGAPATTVAPTTTGA 355
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +3
Query: 543 SKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPPCWWGVPYEASTDY 683
+KT+ W ++ A W+ T++ W H + W P + +++
Sbjct: 475 AKTQANWYHPTKTQANWYHPTKTQCNWYHPTKTQANWYHPSKTQSNW 521
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 387 LLVENLPSSYLFDYQE-KLKELFSKHGEINTVK 482
L V NLP FD +E +++ELFSKHG + V+
Sbjct: 173 LFVSNLP----FDAKESEIEELFSKHGVVKQVR 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,801
Number of Sequences: 59808
Number of extensions: 276417
Number of successful extensions: 1097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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