Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF077537-11|AAC26280.1|  230|Caenorhabditis elegans Hypothetical...    28   5.4  

>U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical
           protein F47B7.4 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 645 TAVSARDSTATESACPSTTAPCSD 574
           T ++   ST TE  CP++T  C D
Sbjct: 86  TTMATESSTVTEETCPTSTTKCPD 109


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 537 SNSKTKTVWKRRCRSTAPWWRGTRSPWRWSHAPRPP 644
           + + T T   +   + A WW+ T S  RW   PR P
Sbjct: 225 TTTPTPTTTTQSPNTRAQWWKTTTSASRWVAGPRHP 260


>U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical
           protein F47B7.5 protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 645 TAVSARDSTATESACPSTTAPCSD 574
           T ++   ST T+ ACP++T  C D
Sbjct: 57  TTLAMESSTVTKEACPTSTTKCPD 80


>AF077537-11|AAC26280.1|  230|Caenorhabditis elegans Hypothetical
           protein F16G10.13 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 645 TAVSARDSTATESACPSTTAPCSD 574
           T ++   ST TE  CP+ T  C D
Sbjct: 93  TTIAMESSTVTEETCPTFTTKCPD 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,932
Number of Sequences: 27780
Number of extensions: 207862
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)