Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 663 RAPPTSTAVSARDSTATESACPSTT 589
           +A PTS   + R    TES  P TT
Sbjct: 125 QASPTSIPYATRAEIKTESIQPETT 149


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 IPQFVIMVAQKKGRGLKLRQPNP 172
           +P  + +V+ K G G +L QP P
Sbjct: 91  VPSSLNVVSDKTGNGGRLLQPYP 113


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 IPQFVIMVAQKKGRGLKLRQPNP 172
           +P  + +V  KKG+G  L +P P
Sbjct: 92  VPSSLNVVTNKKGKGGPLLRPYP 114


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 104 IPQFVIMVAQKKGRGLKLRQPNP 172
           +P  + ++++K G G +L QP P
Sbjct: 90  VPSSLNVISEKIGNGGRLLQPYP 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,810
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)