Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021681
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    31   0.54 
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    29   2.2  
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    28   6.6  
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea...    27   8.8  
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein         27   8.8  
At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +3

Query: 387 LLVENLPSSYLFDYQEKLKELFSKHGEINTVK 482
           ++V+NLPS ++ +  E+L+++FS+ GEI  VK
Sbjct: 4   IIVKNLPSKHVTE--ERLRDVFSRKGEIADVK 33


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 387 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 491
           L V+N+P +      E+LKELF +HGE+  +   P
Sbjct: 294 LYVKNIPEN---TSTEQLKELFQRHGEVTKIVTPP 325


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 651 TSTAVSARDSTATESACPSTTAPCSDSA-FSRLSLFLN 541
           TS  V A+D T    +CP+TT    DSA FS L   L+
Sbjct: 17  TSFRVFAQDPTYRYHSCPNTTIFSRDSAYFSNLQTLLS 54


>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 473

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 563 EKALSEHGAVVEGHALSVAVESRAETAVLVGGA 661
           +K LS HG  + GH L+V   + A + VL GGA
Sbjct: 368 QKYLS-HGGTLRGHRLAVLCLAAAGSLVLSGGA 399


>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
          Length = 890

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 186 IFSGLGFGCLSFSPRPFFWATMMTNCGI*IKNANNNCFTNS 64
           I + L + C  F P P FW + +T+  I     +N C +++
Sbjct: 406 IAARLNYLCPQFFPAPGFWPSQLTDNSIIDPTPSNKCSSSN 446


>At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile: PF01535 PPR
           repeat
          Length = 491

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 405 PSSYLFDYQEKLKELFSKHGEINT-VKRGPIIVTELPQ 515
           PS+  F   + L EL +KH E+N  +++  I  TE+P+
Sbjct: 454 PSNVSFKRIKLLMELANKHDEVNNLIQKMAIFSTEIPR 491


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,409
Number of Sequences: 28952
Number of extensions: 194485
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)