Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021680
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 113 1e-25
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 105 2e-23
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 105 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 83 2e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 8e-16
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 81 1e-15
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 80 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 9e-15
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 75 5e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 3e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 63 2e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 62 3e-10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 5e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 61 9e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 61 9e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 58 6e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 56 3e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 54 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 7e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 7e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 6e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 8e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 8e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 41 8e-04
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 41 8e-04
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.016
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.016
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.016
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.066
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.066
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.12
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 33 0.20
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.35
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 3.3
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 3.3
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 4.4
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 4.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At2g33420.1 68415.m04096 expressed protein 28 5.8
At4g23540.1 68417.m03392 expressed protein probable membrane pro... 28 7.6
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 7.6
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 7.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 113 bits (272), Expect = 1e-25
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 699 TCVFGGAPKREQARDLE 749
TC++GG PK Q RDL+
Sbjct: 204 TCIYGGVPKGPQVRDLQ 220
Score = 103 bits (246), Expect = 2e-22
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +2
Query: 233 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 699 TCVFGGAPKREQARDL 746
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 95.1 bits (226), Expect = 4e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 105 bits (253), Expect = 2e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 699 TCVFGGAPKREQARDL 746
TC++GGAPK Q RDL
Sbjct: 270 TCIYGGAPKGPQIRDL 285
Score = 95.1 bits (226), Expect = 4e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 699 TCVFGGAPKREQARDLE 749
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 699 TCVFGGAPKREQARDLE 749
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 699 TCVFGGAPKREQARDLE 749
TC++GGAPK Q RDLE
Sbjct: 262 TCLYGGAPKGPQLRDLE 278
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 699 TCVFGGAPKREQARDLE 749
+ V+GG K EQ ++L+
Sbjct: 333 SAVYGGMSKHEQFKELK 349
Score = 71.7 bits (168), Expect = 5e-13
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 699 TCVFGGAPKREQARDLE 749
V+GG+ +Q +L+
Sbjct: 634 VPVYGGSGVAQQISELK 650
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 699 TCVFGGAPKREQARDLE 749
TC++GGAPK Q ++LE
Sbjct: 539 TCLYGGAPKGPQLKELE 555
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ G+ PTPIQAQ WPIA+ ++++A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.4 bits (182), Expect = 9e-15
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 699 TCVFGGAPKREQARDLE 749
V+GG+ +Q +L+
Sbjct: 501 VPVYGGSGVAQQISELK 517
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 699 TCVFGGAPKREQARDLE 749
C++GGAPK Q +++E
Sbjct: 333 ACLYGGAPKGPQLKEIE 349
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V + G+ P+PIQAQ WPIAM ++++A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 689
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 690 VRNTCVFGGAPKREQ 734
R T + GG EQ
Sbjct: 418 FRVTSIVGGQSIEEQ 432
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 683
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 684 SYVRNTCVFGGAPKREQARDLE 749
+ V+ +GG P +Q R+LE
Sbjct: 264 TGVKVVVAYGGTPINQQLRELE 285
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 683
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 684 SYVRNTCVFGGAPKREQARDLE 749
+ V+ +GG P +Q R+LE
Sbjct: 251 TGVKVVVAYGGTPVNQQIRELE 272
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 263 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA 514
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 686
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 687 YVRNTCVFGGAPKREQ 734
+++ CV+GG+ K Q
Sbjct: 219 GLKSICVYGGSSKGPQ 234
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLL 511
G++L+
Sbjct: 150 DGRDLI 155
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 683
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 684 SYVRNTCVFGGAPKREQARDLE 749
+ V+ +GG P +Q R+LE
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELE 277
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 683
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 684 SYVRNTCVFGGAPKREQARDLE 749
+ V+ +GG P +Q R+LE
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELE 277
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 58.0 bits (134), Expect = 6e-09
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 689
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 690 VRNT-CVFGGAPKREQARDLE 749
+T C++GG P +Q R L+
Sbjct: 204 SLDTICLYGGTPIGQQMRQLD 224
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 689
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 690 VRNT-CVFGGAPKREQARDL 746
+T C++GG P +Q R+L
Sbjct: 216 SLDTICLYGGTPIGQQMREL 235
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 424
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 680
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 681 TSY--VRNTCVFGGAPKREQ 734
Y +R+ GG R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +3
Query: 516 TQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 680
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 681 TSYVRNTCVFGGAPKREQARDL 746
+ R+ V GG+ R Q L
Sbjct: 215 HARFRSILVSGGSRIRPQEDSL 236
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 695
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 696 NTCVFGGAPK-REQAR 740
V GG K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG++ PT +QAQ P+ +SG+++L
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 677
R +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 678 HTSYVRNTCVFGG 716
+ + + C++GG
Sbjct: 199 GSLGLSSCCLYGG 211
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 674
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLL 511
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 677
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 678 HTSYVRNTCVFGG 716
Y+ CV+GG
Sbjct: 203 SAPYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 693 RNTCVFGGAPKREQ 734
+ V GG P Q
Sbjct: 216 KTALVVGGDPMSGQ 229
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 311 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLLA 514
A++GK+LLA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 693 RNTCVFGGAPKREQ 734
+ V GG P Q
Sbjct: 79 KTALVVGGDPMSGQ 92
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 699 TCVFGGAPKREQARDL 746
+ + GG +Q +L
Sbjct: 130 SLLVGGDSMEDQFEEL 145
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE N V +K GYK PTPIQ + P+ +SG +++A
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/85 (36%), Positives = 43/85 (50%)
Frame = +3
Query: 480 GR*LCLERIYWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 659
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 660 VAADFGHTSYVRNTCVFGGAPKREQ 734
+ + + ++ + GG REQ
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 689
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 690 VRNTCVFGGAPKREQARDLE 749
V + + GG LE
Sbjct: 120 VNSVLLVGGREVEADMNTLE 139
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 519 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 695
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 696 NTCVFGGAPKREQAR 740
+ V GG +R +A+
Sbjct: 192 VSMVIGGNNRRSEAQ 206
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 650
+ +TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 653
R +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLA 514
K+++A
Sbjct: 84 KDVVA 88
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLA 514
A
Sbjct: 180 ECFA 183
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 650
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 698
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 699 TCVFGGAPKREQARDL 746
+ + GG Q L
Sbjct: 158 SVIVGGMDMLTQTMSL 173
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE ++ + K +G ++PTP+Q P ++G+++L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 686
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 687 Y-VRNTCVFGGAPKREQARDLE 749
R+ V GG +R Q +LE
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLE 500
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 650
+ +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 42.3 bits (95), Expect = 3e-04
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 498 ERIYWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF- 674
E + +TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 192 EDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL 250
Query: 675 -GHTSYVRNTCVFGGAPKREQARDL 746
H+ V V GG ++ +A L
Sbjct: 251 KYHSQTVGK--VIGGEKRKTEAEIL 273
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG+ T IQA+ P M G+++L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 650
+ +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 665
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 689
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 690 VRNTCVFGGAPKREQARDLE 749
V + + GG + + +E
Sbjct: 120 VNSVLLVGGREVKADMKIIE 139
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 489 LCLERIYWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 650
LC I +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 749
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQ 157
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 749
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQ 155
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 749
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 155
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 653
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 677
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 678 HTSYVRNTCVFGGAPKREQ 734
+R + GG + +Q
Sbjct: 114 ADISLRCAVLVGGIDRMQQ 132
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 662
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 693 RNTCVFGGAPKRE 731
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + G+ G++ P+PIQ + PIA++G+++LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 693 RNTCVFGGAPKRE 731
+ GG ++
Sbjct: 229 QVMVTTGGTSLKD 241
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + G+ G++ P+PIQ + PIA++G+++LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 653
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 665
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 693 RNTCVFGGAPKRE 731
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 693 RNTCVFGGAPKRE 731
+ GG R+
Sbjct: 222 QVMVTTGGTSLRD 234
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 692
R + G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 693 RNTCVFGGAPKRE 731
GG R+
Sbjct: 252 EVMVTTGGTSLRD 264
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 677
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYSNGFRQNVGLHLAS 559
PI+ F++ D V +GV GYK+P+ IQ + + G++++A + + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 560 HC 565
C
Sbjct: 80 VC 81
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +3
Query: 513 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 683
+ Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 684 SYVRNTCVFGGAPKREQARDLE 749
+ + C+ GG E + LE
Sbjct: 118 NIQAHACI-GGKSIGEDIKKLE 138
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 665
++ TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 666 ADFGHTSYVRNTCVFGGAPKREQARDLE 749
G + GGA + Q L+
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEALK 240
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYS 520
FEE PD + ++ G+ PT +Q+ P + G + + S
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQS 154
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 612 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLE 749
AL+L+PTRELA Q ++ G H + + C+ GG E R LE
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLE 151
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 32.3 bits (70), Expect = 0.35
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Frame = +3
Query: 519 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 653
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 654 QQVAADFGHTSYVRNTCVFGGAPKREQARDLE 749
+ + V+ + GG +Q R L+
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 513 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 653
+ ++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 652 ICCANSLVGAKTKAIGPSPLRI 587
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At4g23540.1 68417.m03392 expressed protein probable membrane
protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
Length = 675
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 570 CAQWLARCRPTFCRNPFEYANKF 502
C L R P FC P + ANKF
Sbjct: 96 CGHELLRLLPAFCNYPVDVANKF 118
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 418 CATRCKDNGLQRTDAYSSSRLADSYVWKEFIGVLKR 525
C T + GL+ + Y ++RLA S V KE I + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,183
Number of Sequences: 28952
Number of extensions: 330338
Number of successful extensions: 1090
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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