Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021678
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q34522 Cluster: NADH-ubiquinone oxidoreductase chain 3;...    35   2.4  
UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2; ...    33   7.3  
UniRef50_Q8RIN4 Cluster: Arsenical pump-driving ATPase; n=2; Fus...    33   9.7  

>UniRef50_Q34522 Cluster: NADH-ubiquinone oxidoreductase chain 3;
           n=36; Platyhelminthes|Rep: NADH-ubiquinone
           oxidoreductase chain 3 - Fasciola hepatica (Liver fluke)
          Length = 118

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  FKNLNQYIFIVIFDVHLGPSTLWRVGNPLFLGLFRYVEMFECAELH*EREQSYFCYNTYI 266
           F  L    F++ F V +  + LW +   +F G   +V  FEC  L     ++YF Y  +I
Sbjct: 4   FAVLGLLFFLIFFLVLVFHAFLWNLDLGIFSGERSWVSSFECGFLSQRVTENYFSYTYFI 63

Query: 267 LDFF 278
           L  F
Sbjct: 64  LLVF 67


>UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1448

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +1

Query: 7   LKTSFYFYYIFYNSGVNFNIFFRYP 81
           L +SFYFYY +Y  GV F IFF +P
Sbjct: 60  LSSSFYFYYYYYFYGVLF-IFFLFP 83


>UniRef50_Q8RIN4 Cluster: Arsenical pump-driving ATPase; n=2;
           Fusobacterium nucleatum|Rep: Arsenical pump-driving
           ATPase - Fusobacterium nucleatum subsp. nucleatum
          Length = 388

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 382 FKRIRP*INALFAKYEIITLHDLHTTKVIT-EVPQLKKSNIYVL*QKYD 239
           +K I P    +F + E   + +++ T+++T  +P  K+ NIYV+ +KYD
Sbjct: 302 YKNINP--AEIFCQTESFKIEEVNGTRILTIHLPFAKEENIYVIKEKYD 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,106,133
Number of Sequences: 1657284
Number of extensions: 12283893
Number of successful extensions: 21882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21875
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)