Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021678
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.7  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.4  

>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 736 TTALQLCLGVGTSTYKSKLTTICFRTLHIRNPY*IHWEPYRFFFNWHSRSLRIF 575
           T  +  CLG  TS+   K  +I  R L +   Y   +  Y F F W+ ++L IF
Sbjct: 132 TLGILACLGSFTSS-SLKTLSISNRPLALCRIYVDGFHSYMFQFVWNHQALAIF 184


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 337 EIITLHDLHTTKVITEVPQLKK 272
           E+ITL D+H +++ T+ P +KK
Sbjct: 30  ELITLLDIHYSELFTKNPWMKK 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,932
Number of Sequences: 5004
Number of extensions: 56698
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)