Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021678
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   6.9  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   28   9.1  

>SB_36689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +1

Query: 145 AHY--GEWAIPFSLVYLGMWRC-LSV----RNFIRKESSRIFVIIHIYWIFLTGVL 291
           +HY  GE    F +  +G+  C LSV    R FIR  SS + ++  + W+   GVL
Sbjct: 14  SHYSSGEMVSSFVIFGIGIIGCFLSVLALGREFIRGNSSTLVIVAGLAWVDFAGVL 69


>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 288 YPS*KNPIYMY-YNKNTTALFPNEVPHTQTSPHT 190
           YP+   P+ MY Y  ++ A++PN+ P     P+T
Sbjct: 42  YPNTTQPLAMYPYTTSSLAMYPNKTPSLAMYPNT 75


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 96  LNQYIFIVIFDV-HLGPSTLWRVGNPLFLGLFRYVEM--FECAEL 221
           L  Y F V   + ++GP +   +G P FL +  YV +  F CA+L
Sbjct: 78  LTSYTFEVCDSLLNIGPCSCMDIGEPAFLSVSSYVSVYNFVCAQL 122


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 198  EMFECAELH*EREQSYFCYNTYILDF 275
            EMFE  + + +    YFCY  ++LDF
Sbjct: 1050 EMFEHLQQNGDLTHFYFCYRWFLLDF 1075


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,130,177
Number of Sequences: 59808
Number of extensions: 381920
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)