Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021677
(676 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4 prot... 113 5e-25
D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein. 113 7e-25
BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4 va... 113 7e-25
AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4 va... 113 7e-25
AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4 pr... 113 7e-25
AK128408-1|BAC87425.1| 189|Homo sapiens protein ( Homo sapiens ... 33 0.70
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 31 4.9
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 31 4.9
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 31 4.9
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 31 4.9
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 31 4.9
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 31 4.9
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 30 6.5
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 30 6.5
>L20868-1|AAA60281.2| 426|Homo sapiens ribosomal protein L4
protein.
Length = 426
Score = 113 bits (272), Expect = 5e-25
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2
Query: 251 QSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
++ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 RAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 86.2 bits (204), Expect = 9e-17
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++VARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MAVARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQT 251
HQT
Sbjct: 60 HQT 62
Score = 75.8 bits (178), Expect = 1e-13
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQRRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRIQRR 204
Score = 31.1 bits (67), Expect = 3.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE+ P P
Sbjct: 127 ALAASALPALVMSKGHRIEEFPELP 151
>D23660-1|BAA04887.1| 427|Homo sapiens ribosomal protein protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC095427-1|AAH95427.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC066925-1|AAH66925.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC014653-1|AAH14653.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC010151-1|AAH10151.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC009888-1|AAH09888.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC007996-1|AAH07996.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC007748-1|AAH07748.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC005817-1|AAH05817.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>BC001365-1|AAH01365.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>AK223057-1|BAD96777.1| 427|Homo sapiens ribosomal protein L4
variant protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHANLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 31.5 bits (68), Expect = 2.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV +GH IE++P P
Sbjct: 127 ALAASALPALVMPKGHRIEEVPELP 151
>AB208977-1|BAD92214.1| 441|Homo sapiens ribosomal protein L4
variant protein.
Length = 441
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 78 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 126
Score = 86.2 bits (204), Expect = 9e-17
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +3
Query: 60 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 239
+++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ A
Sbjct: 14 AMACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELA 72
Query: 240 GHQTS 254
GHQTS
Sbjct: 73 GHQTS 77
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 164 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 219
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 141 ALAASALPALVMSKGHRIEEVPELP 165
>AB061820-1|BAB79458.1| 427|Homo sapiens ribosomal protein L4
protein.
Length = 427
Score = 113 bits (271), Expect = 7e-25
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 400
+ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWH 112
Score = 85.8 bits (203), Expect = 1e-16
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 63 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 243 HQTS 254
HQTS
Sbjct: 60 HQTS 63
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKVNAQ-RRRIQRK 674
LPLVV DKV+ KTK+AV+ L++LKAW+DI KVY SQR+RAGK + RRRIQR+
Sbjct: 150 LPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRR 205
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 442 SVAATGVPALVQARGHIIEKIPGFP 516
++AA+ +PALV ++GH IE++P P
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELP 151
>AK128408-1|BAC87425.1| 189|Homo sapiens protein ( Homo sapiens
cDNA FLJ46551 fis, clone THYMU3038687. ).
Length = 189
Score = 33.5 bits (73), Expect = 0.70
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +1
Query: 271 WTCCRPNSACPWW-----WYS*VRSGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGL 435
WT CR +AC W W++ V +GC W + H R+P E L
Sbjct: 79 WTGCRSTAACSRWRGCRPWWASVCTGCRSCVQRWRNSHQDHVLWGGPPEPRRPVGVERSL 138
Query: 436 GGSVAATGVPA 468
G+ + PA
Sbjct: 139 HGAPSCLSTPA 149
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 105 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 147
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 805 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 847
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 1040 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 1082
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 625 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 667
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen
protein.
Length = 1336
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 625 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 667
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen
protein.
Length = 1516
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + IPGFP L
Sbjct: 805 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGIPGFPGL 847
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII,
alpha 1 protein.
Length = 1336
Score = 30.3 bits (65), Expect = 6.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + +PGFP L
Sbjct: 625 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGL 667
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 30.3 bits (65), Expect = 6.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 APSRQPPTAESGLGGSVAATGVPALVQARGHI-IEKIPGFPWL 522
A S P GL G GVP L A+G + + +PGFP L
Sbjct: 805 ARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGL 847
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,451,184
Number of Sequences: 237096
Number of extensions: 2213019
Number of successful extensions: 6591
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6544
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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